Hg_chrom2_TN10mRNA_3443
Organism: Heterodera glycines Gene Locus: chr2:6877804-6879736 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 0.905 | 0.973 | 0.503 | 0.77 | 1.373 | 0.898 | 1.217 | 0.811 | 1.282 | 0.7 | 1.002 | 0.676 | 0.983 | 1.341 | 1.599 | 1.117 | 0.811 | 1.123 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3277
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.096
|
0.030
|
0.593
|
0.195
|
0.173
|
0.198
|
0.007
|
0.108
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003332
|
2.000
|
1.000
|
Hsc_gene_21618.t1
|
Hsc_gene_16337.t1;Hsc_gene_21618.t1;Hsc_gene_21619.t1
|
— | — |
KAI1714041.1 dynein light intermediate chain (DLIC) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005868|GO:0007018
|
GO:0005575_0.912|GO:0110165_0.908|GO:0005622_0.826|GO:0016020_0.810|GO:0043226_0.776|GO:0008150_0.775|GO:0043229_0.759|GO:0005737_0.732|GO:0003674_0.681|GO:0005488_0.652|GO:0050896_0.634|GO:0043228_0.629|GO:0043232_0.629|GO:0005515_0.596|GO:0043227_0.584|GO:0043231_0.567|GO:0005856_0.565|GO:0071944_0.555|GO:0015630_0.552|GO:0005815_0.548|GO:0005814_0.546|GO:0005813_0.545|GO:0005886_0.543|GO:0009987_0.536|GO:0065007_0.521|GO:0050789_0.510|GO:0050794_0.501
|
IPR008467+213-390+|IPR022780+37-166_213-317_326-400+
|
— |
PF05783+37-166_213-317_326-400+Dynein_light_intermediate_chain_(DLIC)
|
— |
PTHR12688+213-390+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;316-411
|
1.000
|
38-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
44761.250
|
8.688
|
10.000
|
23.601
|
8.516
|
50.852
|
49.148
|
13.625
|
9.976
|
55.474
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
242.197
|
283.021
|
133.827
|
163.084
|
113.102
|
112.160
|
320.119
|
402.577
|
72.054
|
432.613
|
278.088
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.310
|
-0.932
|
0.395
|
-0.560
|
— |
1.525
|
1.739
|
— |
-2.704
|
— | — | — | — |
No JSON data available for plots.