Hg_chrom2_TN10mRNA_3444
Organism: Heterodera glycines Gene Locus: chr2:6880700-6885210 Feature type: polypeptideProtein Sequence
Length: 742
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.94 | 0.613 | 0.465 | 0.674 | 0.449 | 0.931 | 1.415 | 1.617 | 1.348 | 0.551 | 1.586 | 1.834 | 0.518 | 0.908 | 1.309 | 0.928 | 1.144 | 1.451 | 1.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.104
|
0.157
|
0.006
|
0.106
|
0.917
|
0.226
|
0.502
|
0.004
|
0.235
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006867
|
1.000
|
1.000
|
Hsc_gene_21616.t1
|
Hsc_gene_21615.t1;Hsc_gene_21616.t1;Hsc_gene_21617.t1
|
— |
P46978.1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [Mus musculus]
|
KAI1724213.1 oligosaccharyl transferase STT3 subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004576|GO:0006486|GO:0016020
|
GO:0005575_0.828|GO:0110165_0.828|GO:0016020_0.793|GO:0008150_0.770|GO:0071944_0.690|GO:0005886_0.661|GO:0009987_0.639|GO:0005622_0.580|GO:0005737_0.580|GO:0043226_0.564|GO:0043229_0.564|GO:0043227_0.550|GO:0043231_0.546|GO:0005773_0.520|GO:0008152_0.508
|
IPR003674+24-741+|IPR048307+29-429+|IPR048999+562-619+
|
— |
PF02516+29-429+Oligosaccharyl_transferase_STT3,_N-terminal|PF21436+562-619+STT3/PglB/AglB_core_domain
|
G3DSA:3.40.50.12610:FF:000002+541-694+dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_STT3A
|
PTHR13872+24-741+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-742
|
9ygy_I
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
83391.240
|
8.277
|
15.500
|
18.329
|
17.385
|
38.949
|
61.051
|
10.916
|
7.412
|
48.787
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
2153.048
|
2107.045
|
1488.452
|
2046.198
|
2610.461
|
2093.539
|
3288.718
|
1231.724
|
2104.970
|
2266.055
|
2197.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.731
|
-0.179
|
0.568
|
0.320
|
-0.304
|
0.660
|
-0.869
|
1.557
|
— | — | — | — | — |
No JSON data available for plots.