SCN Proteipedia

Hg_chrom2_TN10mRNA_3445

Organism: Heterodera glycines Gene Locus: chr2:6885547-6896609 Feature type: polypeptide

Protein Sequence

Length: 1,217

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.86	1.032	0.792	0.878	1.164	1.707	0.46	1.397	0.913	1.388	0.871	0.87	1.096	1.106	1.207	1.244	0.781	0.822	1.201	0.967	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3279	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.910

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PSKKRKT	23-48	0.958	—	—	—	—	0.000	—	—	0.825	0.108	0.006	0.439	0.067	0.068	0.085	0.006	0.098	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006868	1.000	1.000	Hsc_gene_21614.t1	Hsc_gene_21614.t1	—	P79457.2 Histone demethylase UTY [Mus musculus]	KAI1710734.1 jmjC domain, hydroxylase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.972\|GO:0005575_0.935\|GO:0009987_0.934\|GO:0003674_0.879\|GO:0110165_0.849\|GO:0016043_0.799\|GO:0071840_0.799\|GO:0005622_0.772\|GO:0016020_0.770\|GO:0043226_0.718\|GO:0003824_0.702\|GO:0140096_0.702\|GO:0043229_0.694\|GO:0006325_0.681\|GO:0006338_0.681\|GO:0043227_0.674\|GO:0140993_0.655\|GO:0032451_0.650\|GO:0032452_0.650\|GO:0140457_0.650\|GO:0043231_0.644\|GO:0065007_0.561\|GO:0050789_0.551\|GO:0005634_0.545\|GO:0050794_0.528\|GO:0032502_0.514	IPR003347+914-1077_952-1060+\|IPR011990+22-293_62-281_247-398_298-417+\|IPR019734+68-101_145-178_184-217_333-366_367-400_369-396+\|IPR046941+1133-1195+\|IPR048560+1140-1196+\|IPR048562+1067-1122+\|IPR051630+45-1208+	SM00028+68-101_145-178_184-217_333-366_367-400+\|SM00558+914-1077+	PF02373+952-1060+JmjC_domain,_hydroxylase\|PF13181+369-396+Tetratricopeptide_repeat\|PF21322+1067-1122+Lysine-specific_demethylase_6/UTY,_C-terminal_helical_domain\|PF21326+1140-1196+KDM6,_GATA-like	—	PTHR14017+45-1208+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	478-671;835-900	3.000	1-477;672-834;901-1217	6g8f_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.733	138518.270	7.769	21.000	25.801	11.586	50.370	49.630	14.462	11.339	47.247

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3460.765	9326.087	2463.808	1815.315	1294.540	1105.640	2151.760	1786.856	1978.046	6178.309	4378.196

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.150	-2.498	-0.332	-0.520	-0.213	0.971	0.593	0.408	—	—	—	—	—

No JSON data available for plots.

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