SCN Proteipedia

Hg_chrom2_TN10mRNA_3450

Organism: Heterodera glycines Gene Locus: chr2:6941072-6943286 Feature type: polypeptide

Protein Sequence

Length: 377

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.432	1.789	0.675	2.012	0.973	1.088	0.474	1.061	1.356	1.936	0.884	1.404	1.179	0.969	1.57	1.099	0.435	0.522	1.428	0.468	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3284	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	0.963

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.690	0.120	0.020	0.499	0.066	0.030	0.053	0.005	0.074	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006871	1.000	1.000	Hsc_gene_21608.t1	Hsc_gene_21608.t1	—	O17611.3 Nuclear hormone receptor family member nhr-100 [Caenorhabditis elegans]	KAF7635876.1 Nuclear receptor domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.933\|GO:0009987_0.821\|GO:0065007_0.787\|GO:0005575_0.784\|GO:0110165_0.784\|GO:0050789_0.780\|GO:0050794_0.743\|GO:0005622_0.730\|GO:0043226_0.690\|GO:0003674_0.674\|GO:0043229_0.666\|GO:0032501_0.660\|GO:0005488_0.659\|GO:0008152_0.655\|GO:0043170_0.655\|GO:0019222_0.651\|GO:0031323_0.649\|GO:0044237_0.649\|GO:0044238_0.646\|GO:0009058_0.643\|GO:0009059_0.643\|GO:0044249_0.643\|GO:0060255_0.641\|GO:0010467_0.637\|GO:0032502_0.633\|GO:0048856_0.633\|GO:0080090_0.631\|GO:0016020_0.627\|GO:0009889_0.621\|GO:0010556_0.621\|GO:0031326_0.621\|GO:0010468_0.611\|GO:0006139_0.604\|GO:0034654_0.603\|GO:0090304_0.603\|GO:0141187_0.603\|GO:0016070_0.594\|GO:0032774_0.592\|GO:0019219_0.583\|GO:0006351_0.577\|GO:0051252_0.575\|GO:0006355_0.573\|GO:2001141_0.573\|GO:0043227_0.568\|GO:0043231_0.561\|GO:0050896_0.557\|GO:0007275_0.554\|GO:0097159_0.543\|GO:0003676_0.507	IPR000536+177-377_219-372+\|IPR001628+66-140_66-144_68-138_69-85_69-95_85-100_121-129_129-137+\|IPR013088+65-158+\|IPR035500+181-376_189-369+\|IPR049636+69-143+\|IPR052499+67-214+	SM00399+66-140+	PF00104+219-372+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+68-138+Zinc_finger,_C4_type_(two_domains)	—	PTHR47630+67-214+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-377	4oln_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.859	43596.870	8.716	19.000	25.199	9.814	47.480	52.520	15.650	9.549	43.767

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	391.703	112.062	1609.052	71.725	59.742	89.176	57.431	839.626	239.920	469.207	370.941

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.615	-0.781	-4.379	—	0.591	-0.622	3.144	-3.730	—	—	—	—	—

No JSON data available for plots.

Back to Browser