Hg_chrom2_TN10mRNA_3451
Organism: Heterodera glycines Gene Locus: chr2:6943223-6945693 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.778 | 0.544 | 1.336 | 0.616 | 0.722 | 0.901 | 0.792 | 1.565 | 1.642 | 0.64 | 1.864 | 2.054 | 1.05 | 0.755 | 1.182 | 0.693 | 0.987 | 1.625 | 0.673 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3285
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
51-72
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.097
|
0.194
|
0.045
|
0.135
|
0.324
|
0.373
|
0.339
|
0.024
|
0.604
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006872
|
1.000
|
1.000
|
Hsc_gene_21607.t1
|
Hsc_gene_21607.t1
|
— |
J9VHZ4.1 Myo-inositol transporter 1 [Cryptococcus neoformans var. grubii H99]
|
KAI1725783.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.924|GO:0005575_0.882|GO:0110165_0.882|GO:0009987_0.821|GO:0016020_0.792|GO:0071944_0.792|GO:0005886_0.769|GO:0003674_0.729|GO:0006810_0.714|GO:0051179_0.714|GO:0051234_0.714|GO:0055085_0.636|GO:0005215_0.594|GO:0022857_0.594|GO:0008643_0.546|GO:0034219_0.546|GO:0008645_0.544|GO:0015749_0.544|GO:0005622_0.525|GO:0005737_0.525|GO:0015144_0.507|GO:0051119_0.507|GO:0015145_0.505|GO:0015149_0.503
|
IPR005828+67-529+|IPR020846+58-518+|IPR036259+49-533_64-521+|IPR045263+81-532+
|
— |
PF00083+67-529+Sugar_(and_other)_transporter
|
— |
PTHR23503+81-532+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-568
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
62703.900
|
8.098
|
11.500
|
16.197
|
13.380
|
34.859
|
65.141
|
9.507
|
6.690
|
49.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
366.101
|
11.783
|
114.907
|
95.672
|
42.155
|
92.240
|
125.391
|
319.716
|
817.026
|
688.225
|
743.426
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.062
|
2.888
|
— |
-1.215
|
1.144
|
— |
1.695
|
-1.212
|
— |
-2.922
|
— | — | — |
No JSON data available for plots.