Hg_chrom2_TN10mRNA_3452
Organism: Heterodera glycines Gene Locus: chr2:6946719-6948772 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.087 | 0.892 | 0.725 | 0.662 | 1.018 | 0.612 | 1.636 | 1.09 | 1.831 | 0.85 | 1.237 | 2.272 | 1.033 | 1.24 | 0.768 | 0.536 | 0.708 | 1.797 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3286
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
6-54
|
0.900
|
— | — | — | — |
0.000
|
— | — |
0.041
|
0.189
|
0.013
|
0.114
|
0.381
|
0.213
|
0.114
|
0.008
|
0.480
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003333
|
2.000
|
1.000
|
Hsc_gene_21606.t1
|
Hsc_gene_21606.t1
|
— |
O61787.2 Innexin-16 [Caenorhabditis elegans]
|
KAI1718645.1 innexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.862|GO:0110165_0.862|GO:0008150_0.854|GO:0009987_0.703|GO:0030054_0.566|GO:0003674_0.559|GO:0005911_0.514|GO:0070161_0.514|GO:0016020_0.506|GO:0051179_0.505|GO:0032501_0.504
|
IPR000990+9-404_18-409_23-401_46-57_75-84_104-126_222-236_298-314+|IPR030476+333-340+
|
— |
PF00876+23-401+Innexin
|
— |
PTHR11893+9-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-428
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
49310.420
|
9.434
|
19.000
|
23.832
|
16.355
|
41.121
|
58.879
|
14.953
|
8.879
|
43.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
356.047
|
39.126
|
49.921
|
41.248
|
173.197
|
409.761
|
179.669
|
221.199
|
52.954
|
1100.192
|
651.376
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.040
|
1.256
|
-1.178
|
-0.999
|
— | — | — | — | — | — |
No JSON data available for plots.