Hg_chrom2_TN10mRNA_3454
Organism: Heterodera glycines Gene Locus: chr2:6949393-6952177 Feature type: polypeptideProtein Sequence
Length: 574
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 0.932 | 0.76 | 0.841 | 1.016 | 0.581 | 0.684 | 0.784 | 1.084 | 1.954 | 0.897 | 2.152 | 2.371 | 0.503 | 0.853 | 0.946 | 0.942 | 0.95 | 1.34 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3287
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.093
|
0.103
|
0.014
|
0.145
|
0.253
|
0.352
|
0.295
|
0.103
|
0.670
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006873
|
1.000
|
1.000
|
Hsc_gene_21605.t1
|
Hsc_gene_21605.t1
|
— |
A9CB25.1 Solute carrier family 22 member 4 [Papio anubis]
|
KAI1712227.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.958|GO:0009987_0.921|GO:0051179_0.840|GO:0006810_0.838|GO:0051234_0.838|GO:0003674_0.803|GO:0055085_0.783|GO:0005575_0.777|GO:0110165_0.776|GO:0016020_0.746|GO:0005886_0.733|GO:0071944_0.733|GO:0005215_0.726|GO:0022857_0.726
|
IPR005828+148-567+|IPR020846+77-563+|IPR036259+154-569_175-566+
|
— |
PF00083+148-567+Sugar_(and_other)_transporter
|
— |
PTHR24064+70-565+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59
|
1.000
|
60-574
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
65302.560
|
7.103
|
3.500
|
21.951
|
14.286
|
40.592
|
59.408
|
11.672
|
10.279
|
44.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1530.303
|
526.359
|
719.078
|
1454.297
|
1690.922
|
2438.997
|
1049.912
|
1951.322
|
827.021
|
2388.224
|
1719.138
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.222
|
1.329
|
1.124
|
0.185
|
0.544
|
-1.207
|
-0.423
|
-0.754
|
— | — | — | — | — |
No JSON data available for plots.