Hg_chrom2_TN10mRNA_3456
Organism: Heterodera glycines Gene Locus: chr2:6954472-6956600 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 0.826 | 0.397 | 0.942 | 1.093 | 0.981 | 0.651 | 2.049 | 1.579 | 1.883 | 0.787 | 1.125 | 2.201 | 0.473 | 0.502 | 1.327 | 0.851 | 0.745 | 0.42 | 0.482 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3288
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
25-63
|
0.956
|
— | — | — | — |
0.000
|
— | — |
0.034
|
0.061
|
0.020
|
0.074
|
0.278
|
0.751
|
0.439
|
0.079
|
0.631
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003334
|
2.000
|
1.000
|
Hsc_gene_21604.t1
|
Hsc_gene_21604.t1
|
— |
P59889.1 Zinc transporter ZIP1 [Danio rerio]
|
KAI1722308.1 ZIP zinc transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.868|GO:0005575_0.820|GO:0110165_0.816|GO:0016020_0.774|GO:0006810_0.768|GO:0051179_0.768|GO:0051234_0.768|GO:0071944_0.719|GO:0005886_0.714|GO:0003674_0.708|GO:0009987_0.663|GO:0006811_0.637|GO:0006812_0.617|GO:0030001_0.615|GO:0000041_0.593|GO:0006829_0.586|GO:0055085_0.515
|
IPR003689+5-349+
|
— |
PF02535+5-349+ZIP_Zinc_transporter
|
— |
PTHR11040+6-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-366
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
40522.130
|
6.883
|
3.500
|
20.492
|
14.208
|
42.350
|
57.650
|
11.749
|
8.743
|
44.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
638.601
|
36.441
|
65.849
|
722.348
|
1413.437
|
1259.306
|
996.928
|
1694.150
|
2.410
|
471.398
|
270.403
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
4.173
|
3.563
|
0.937
|
— |
-0.329
|
— |
-0.626
|
-7.739
|
8.479
|
— | — | — |
No JSON data available for plots.