Hg_chrom2_TN10mRNA_3464
Organism: Heterodera glycines Gene Locus: chr2:6985788-6991392 Feature type: polypeptideProtein Sequence
Length: 796
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.49 | 0.799 | 1.04 | 1.173 | 1.288 | 0.523 | 1.131 | 1.48 | 1.171 | 0.78 | 0.887 | 1.989 | 0.725 | 1.436 | 1.31 | 0.803 | 0.628 | 1.546 | 0.259 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3295
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RATKRIR,KRKSPPTEAQRMKRG,RRGECRGGQIMQREKCHRR
|
— | — |
61-87
|
0.972
|
1-20
|
0.972
|
1.000
|
1.000
|
1.000
|
0.265
|
0.043
|
0.021
|
0.310
|
0.216
|
0.263
|
0.310
|
0.070
|
0.668
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006878
|
1.000
|
1.000
|
Hsc_gene_21573.t1
|
Hsc_gene_21573.t1;Hsc_gene_3357.t1
|
— | — |
NP_508701.2 Thrombospondin type-1 domain-containing protein 1 [Caenorhabditis elegans];CAI9666252.1 Thrombospondin type-1 domain-containing protein 1 [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000884+283-359+|IPR038877+102-407+
|
— | — | — |
PTHR16311+102-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
626-732;784-796
|
2.000
|
1-625;733-783
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
91163.600
|
7.993
|
15.000
|
25.879
|
12.312
|
51.382
|
48.618
|
14.447
|
11.432
|
46.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
707.095
|
5541.669
|
374.351
|
319.397
|
94.832
|
47.598
|
124.325
|
76.056
|
60.605
|
581.253
|
358.118
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.119
|
-4.254
|
— |
-1.784
|
-0.980
|
1.396
|
0.575
|
0.851
|
— | — | — | — | — |