Hg_chrom2_TN10mRNA_3468
Organism: Heterodera glycines Gene Locus: chr2:6997008-6999871 Feature type: polypeptideProtein Sequence
Length: 670
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.486 | 1.145 | 0.896 | 0.515 | 0.846 | 0.842 | 1.048 | 1.343 | 1.36 | 1.311 | 0.678 | 1.844 | 1.99 | 0.947 | 1.279 | 0.874 | 0.759 | 0.905 | 1.952 | 1.054 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3298
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3468
|
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
39-61
|
0.994
|
— | — | — |
0.613
|
0.161
|
0.000
|
— |
0.194
|
0.312
|
0.095
|
0.337
|
0.378
|
0.527
|
0.357
|
0.095
|
0.318
|
0.688
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006880
|
1.000
|
1.000
|
Hsc_gene_21576.t1
|
Hsc_gene_21576.t1
|
— |
Q58D55.1 Beta-galactosidase [Bos taurus]
|
KAF7636717.1 Glyco_hydro_35 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0004565|GO:0005975
|
GO:0005575_0.789|GO:0110165_0.778|GO:0003674_0.691|GO:0003824_0.609|GO:0016020_0.571|GO:0005622_0.541|GO:0005737_0.512|GO:0016787_0.512
|
IPR001944+15-635_42-59_63-81_118-137_174-189_269-284_306-321_329-345_591-607+|IPR008979+490-656+|IPR017853+29-359+|IPR019801+176-188+|IPR026283+5-656+|IPR031330+39-358+|IPR048912+414-524+|IPR048913+563-623+
|
— |
PF01301+39-358+Glycosyl_hydrolases_family_35|PF21317+414-524+Beta-galactosidase,_first_all-beta_domain|PF21467+563-623+Beta-galactosidase,_galactose-binding_domain
|
G3DSA:3.20.20.80:FF:000017+25-310+Beta-galactosidase
|
PTHR23421+15-635+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
669-670
|
1.000
|
1-668
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
76822.350
|
8.311
|
14.000
|
23.433
|
15.970
|
42.388
|
57.612
|
13.433
|
10.000
|
45.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
728.751
|
116.857
|
165.565
|
98.996
|
126.969
|
442.460
|
213.920
|
124.174
|
25.605
|
2685.731
|
1545.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.271
|
-0.376
|
-0.631
|
0.327
|
1.816
|
-1.039
|
-1.941
|
0.927
|
-6.822
|
— |
-3.918
|
— | — |