Hg_chrom2_TN10mRNA_3470
Organism: Heterodera glycines Gene Locus: chr2:7003574-7005721 Feature type: polypeptideProtein Sequence
Length: 453
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.129 | 1.124 | 0.228 | 0.92 | 0.962 | 0.631 | 1.987 | 0.883 | 1.551 | 0.602 | 1.688 | 1.042 | 0.976 | 1.397 | 1.325 | 0.977 | 0.97 | 0.679 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3300
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3470
|
22-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.859
|
0.187
|
0.003
|
0.468
|
0.057
|
0.127
|
0.034
|
0.047
|
0.034
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006881
|
1.000
|
1.000
|
Hsc_gene_21577.t1
|
Hsc_gene_21577.t1
|
— |
P55216.1 Putative cystathionine gamma-lyase 2 [Caenorhabditis elegans]
|
KAH7727312.1 cystathionine gamma-lyase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019346|GO:0030170
|
GO:0008150_0.783|GO:0009987_0.735|GO:0005575_0.723|GO:0110165_0.700|GO:0003674_0.667|GO:0008152_0.645|GO:0005622_0.641|GO:0044237_0.613|GO:0044238_0.574|GO:0005737_0.570|GO:0016020_0.545|GO:0003824_0.530
|
IPR000277+52-447_53-444_66-444_84-444_253-267+|IPR015421+64-310+|IPR015422+311-445+|IPR015424+87-444+
|
— |
PF01053+66-444+Cys/Met_metabolism_PLP-dependent_enzyme
|
G3DSA:3.40.640.10:FF:000009+63-310+Cystathionine_gamma-synthase_homolog|G3DSA:3.90.1150.10:FF:000008+312-445+Cystathionine_gamma-synthase
|
PTHR11808+53-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-119;441-453
|
1.000
|
120-440
|
8j6n_L
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
50636.390
|
7.004
|
5.000
|
26.490
|
10.596
|
50.331
|
49.669
|
14.790
|
11.700
|
50.993
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1628.369
|
562.583
|
1357.687
|
778.039
|
1546.385
|
3693.862
|
1501.860
|
7237.132
|
712.356
|
335.766
|
497.161
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.042
|
0.331
|
-0.695
|
0.958
|
1.273
|
-1.292
|
0.869
|
-2.131
|
— | — | — | — | — |
No JSON data available for plots.