Hg_chrom2_TN10mRNA_3475
Organism: Heterodera glycines Gene Locus: chr2:7018203-7026163 Feature type: polypeptideProtein Sequence
Length: 2,090
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.179 | 0.844 | 0.445 | 1.834 | 1.104 | 0.723 | 1.053 | 1.148 | 1.332 | 1.609 | 1.632 | 1.555 | 0.377 | 1.289 | 0.731 | 0.69 | 0.667 | 1.509 | 0.535 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3305
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3475
|
18-ppJ2_pJ2_J3_J4_Male
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
RLIKRFK,RKAKGNRR,KKENSNDRKDREKEK,KKLAEEWDKMAKKADK,KKGLESCYIEVKRRLG,RKNGWLREKEERRKEN,RRKEFVAFLEQWRKMRD,KRNDKIKTKIEEMRRIVK,KRERIGSDDGEEKRKKSNR,KRKKSNRVKKMKRKKNKEK,KKTILGKTTTNRNSERIRK
|
— | — | — | — |
1-25
|
0.958
|
0.990
|
0.000
|
0.000
|
0.498
|
0.316
|
0.020
|
0.539
|
0.148
|
0.151
|
0.100
|
0.040
|
0.116
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006886
|
1.000
|
1.000
|
Hsc_gene_21582.t1
|
Hsc_gene_21583.t1
|
— |
Q9NRJ5.2 Poly(A) polymerase beta [Homo sapiens]
|
XP_057261756.1 poly(A) polymerase gamma isoform X1 [Pezoporus wallicus]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.766|GO:0110165_0.764|GO:0005622_0.724|GO:0016020_0.677|GO:0043226_0.662|GO:0043229_0.646|GO:0008150_0.614|GO:0043227_0.587|GO:0003674_0.536|GO:0043231_0.534|GO:0009987_0.526
|
IPR007012+1789-1870+|IPR043519+1584-1741_1597-1777+
|
— |
PF04928+1789-1870+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1544-1869+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-178;1127-1377
|
3.000
|
1-132;179-1126;1378-2090
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
243612.180
|
8.975
|
49.000
|
34.689
|
11.483
|
53.397
|
46.603
|
19.043
|
15.646
|
38.469
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1025.932
|
386.726
|
673.532
|
567.751
|
342.431
|
883.799
|
187.356
|
661.287
|
2082.737
|
1537.820
|
1771.356
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
0.417
|
-0.138
|
-0.761
|
1.383
|
-2.234
|
-0.523
|
-1.683
|
— | — | — | — | — |