Hg_chrom2_TN10mRNA_3477
Organism: Heterodera glycines Gene Locus: chr2:7030469-7040142 Feature type: polypeptideProtein Sequence
Length: 2,276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.603 | 1.359 | 0.807 | 0.455 | 1.97 | 1.127 | 0.56 | 0.681 | 1.445 | 1.407 | 1.498 | 1.964 | 1.538 | 0.355 | 1.273 | 0.734 | 0.677 | 0.573 | 1.656 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3307
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.503
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKSKNYGNNFKKWKKL,RRIWEDFVVETDRKRHP,KKTFGKNWRENAQKKREI,RREHFIGILRIPGAKTRLK,KKGSKKSKNYGNNFKKWKK,RRFFCDSSDSKAMQKVKIR,ELKRKMEERQLEKRRKEKVRERALAQKREEGQKDKSERES
|
52-72
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.535
|
0.179
|
0.014
|
0.558
|
0.148
|
0.159
|
0.090
|
0.053
|
0.120
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006888
|
1.000
|
1.000
|
Hsc_gene_21585.t1
|
Hsc_gene_21585.t1
|
— | — |
CDW59007.1 poly(A) polymerase alpha [Trichuris trichiura]
|
TKA23768
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.744|GO:0110165_0.741|GO:0005622_0.724|GO:0016020_0.656|GO:0043226_0.654|GO:0043229_0.634|GO:0008150_0.608|GO:0043227_0.583|GO:0003674_0.547|GO:0043231_0.529|GO:0009987_0.516
|
IPR007012+1979-2119+|IPR043519+1764-1921_1794-1946+
|
— |
PF04928+1979-2119+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1797-2236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;596-685;1376-1533
|
3.000
|
8-595;686-1375;1534-2276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
268063.050
|
7.238
|
12.500
|
33.743
|
11.028
|
53.251
|
46.749
|
17.487
|
16.257
|
36.380
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
1535.722
|
36.429
|
93.799
|
356.609
|
205.754
|
200.007
|
42.289
|
182.873
|
2106.084
|
4720.062
|
3599.785
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.133
|
3.153
|
2.037
|
-0.825
|
— |
-2.231
|
— |
-1.971
|
— | — |
-4.431
|
— | — |
No JSON data available for plots.