Hg_chrom2_TN10mRNA_3485
Organism: Heterodera glycines Gene Locus: chr2:7066265-7067514 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.21 | 1.015 | 1.037 | 0.694 | 1.566 | 0.602 | 0.639 | 1.174 | 1.268 | 1.224 | 1.169 | 1.579 | 1.025 | 0.903 | 1.712 | 0.623 | 0.385 | 0.864 | 0.774 | 0.79 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3315
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
RRLAVLRVRADEEKARIKK,NAPKSEQKEKPGEANLRKKR
|
— | — | — | — | — |
0.918
|
0.081
|
0.000
|
— |
0.516
|
0.203
|
0.075
|
0.553
|
0.037
|
0.035
|
0.096
|
0.005
|
0.159
|
0.295
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001144
|
3.000
|
2.000
|
Hsc_gene_23394.t1;Hsc_gene_25656.t1
|
— | — | — |
KAI3422304.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
MCR4263709
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.937|GO:0005575_0.890|GO:0110165_0.890|GO:0003674_0.869|GO:0016020_0.790|GO:0050896_0.769|GO:0003824_0.749|GO:0006950_0.718|GO:0071944_0.705|GO:0005886_0.699|GO:0016740_0.690|GO:0009987_0.684|GO:0016772_0.660|GO:0016779_0.656|GO:0070566_0.650|GO:0070733_0.650|GO:0005622_0.633|GO:0005488_0.603|GO:0008152_0.602|GO:0044238_0.585|GO:0043226_0.580|GO:0005515_0.564|GO:0005737_0.563|GO:0043229_0.557|GO:0043170_0.555|GO:0051716_0.549|GO:0043227_0.533|GO:0019538_0.529|GO:0043231_0.515|GO:0016787_0.505|GO:0043412_0.502
|
IPR003812+148-250_148-283+|IPR036597+79-292_144-281+|IPR040198+118-274+
|
— |
PF02661+148-250+Fic/DOC_family
|
— |
PTHR13504+118-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
33913.990
|
8.235
|
6.500
|
33.557
|
9.732
|
46.980
|
53.020
|
18.456
|
15.101
|
44.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
8.502
|
0.157
|
0.293
|
0.314
|
0.078
|
0.245
|
0.304
|
2.609
|
0.000
|
35.699
|
20.399
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3.286
|
-2.966
|
-5.924
|
— |
-8.229
|
— | — |