Hg_chrom2_TN10mRNA_3486
Organism: Heterodera glycines Gene Locus: chr2:7068870-7070115 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.278 | 0.99 | 1.032 | 0.611 | 1.714 | 0.636 | 0.675 | 1.241 | 1.34 | 1.246 | 1.128 | 1.669 | 0.788 | 0.887 | 1.664 | 0.557 | 0.349 | 0.913 | 0.818 | 0.626 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3316
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RRLAVLRVRADEEKARIKK,NAPKSEQKEKPGEANLRKKR
|
— | — | — | — | — |
0.915
|
0.030
|
0.000
|
— |
0.477
|
0.219
|
0.067
|
0.570
|
0.040
|
0.041
|
0.120
|
0.006
|
0.154
|
0.286
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001144
|
3.000
|
2.000
|
Hsc_gene_23394.t1;Hsc_gene_25656.t1
|
— | — | — |
KAI3422304.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
HAM43154
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0005575_0.886|GO:0110165_0.886|GO:0003674_0.869|GO:0016020_0.790|GO:0050896_0.769|GO:0003824_0.757|GO:0006950_0.719|GO:0071944_0.714|GO:0005886_0.709|GO:0016740_0.693|GO:0009987_0.680|GO:0016772_0.661|GO:0016779_0.657|GO:0070566_0.650|GO:0070733_0.650|GO:0005622_0.636|GO:0005488_0.605|GO:0008152_0.599|GO:0043226_0.578|GO:0044238_0.578|GO:0005737_0.570|GO:0005515_0.565|GO:0043229_0.555|GO:0043170_0.547|GO:0051716_0.545|GO:0043227_0.531|GO:0019538_0.525|GO:0043231_0.516|GO:0016787_0.502
|
IPR003812+132-234_132-267+|IPR036597+77-276_128-265+|IPR040198+103-257+
|
— |
PF02661+132-234+Fic/DOC_family
|
— |
PTHR13504+103-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84
|
1.000
|
85-282
|
6i7l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
31888.630
|
7.088
|
2.500
|
34.043
|
8.511
|
46.809
|
53.191
|
18.085
|
15.957
|
45.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
17.247
|
0.760
|
2.148
|
0.676
|
0.724
|
0.997
|
0.714
|
5.102
|
0.000
|
71.286
|
40.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2.240
|
-2.694
|
-6.969
|
— |
-6.447
|
— | — |