Hg_chrom2_TN10mRNA_3488
Organism: Heterodera glycines Gene Locus: chr2:7083322-7084703 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.544 | 1.422 | 0.85 | 0.62 | 0.959 | 0.83 | 0.771 | 1.799 | 1.279 | 0.826 | 1.635 | 0.846 | 1.699 | 0.83 | 0.954 | 0.668 | 1.002 | 1.308 | 1.937 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3318
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
28-66
|
0.953
|
— | — |
0.000
|
— | — |
0.816
|
0.246
|
0.023
|
0.338
|
0.348
|
0.076
|
0.090
|
0.042
|
0.103
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003338
|
1.000
|
2.000
|
Hsc_gene_15945.t1;Hsc_gene_4704.t1
|
Hsc_gene_14869.t1;Hsc_gene_15945.t1;Hsc_gene_20712.t1;Hsc_gene_22209.t2;Hsc_gene_22209.t3;Hsc_gene_24808.t1;Hsc_gene_4704.t1;Hsc_gene_4704.t2;Hsc_gene_7284.t1;Hsc_gene_8873.t1
|
— | — |
KAH7722482.1 pogo transposable element with KRAB domain-like protein [Aphelenchus avenae]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.889|GO:0110165_0.889|GO:0005622_0.837|GO:0016020_0.809|GO:0043226_0.802|GO:0043229_0.795|GO:0043227_0.764|GO:0043231_0.756|GO:0005634_0.625|GO:0031974_0.585|GO:0043233_0.585|GO:0070013_0.583|GO:0031981_0.573|GO:0005654_0.556
|
IPR004875+34-206+
|
— |
PF03184+34-206+DDE_superfamily_endonuclease
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
31988.820
|
10.070
|
19.000
|
29.496
|
14.748
|
49.640
|
50.360
|
19.065
|
10.432
|
47.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
6.986
|
7.269
|
4.161
|
4.377
|
3.527
|
3.135
|
1.725
|
3.157
|
3.598
|
17.607
|
11.603
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.029
|
— | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.