Hg_chrom2_TN10mRNA_3490
Organism: Heterodera glycines Gene Locus: chr2:7092776-7096226 Feature type: polypeptideProtein Sequence
Length: 565
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.906 | 0.772 | 1.587 | 0.678 | 0.998 | 0.442 | 1.062 | 1.259 | 1.244 | 0.483 | 1.353 | 1.622 | 1.089 | 1.951 | 0.961 | 1.103 | 1.341 | 0.953 | 0.416 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3320
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RPRR,RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.425
|
0.200
|
0.044
|
0.469
|
0.043
|
0.020
|
0.027
|
0.139
|
0.157
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006895
|
2.000
|
0.000
|
0.000
|
Hsc_gene_22336.t1;Hsc_gene_22341.t1
|
F25H5.4a;F25H5.4b
|
P29691.4 Elongation factor 2 [Caenorhabditis elegans]
|
MPC78817.1 Elongation factor 2 [Portunus trituberculatus]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.834|GO:0005575_0.760|GO:0110165_0.753|GO:0009987_0.696|GO:0005622_0.583|GO:0003674_0.572|GO:0065007_0.506
|
IPR000795+409-464+|IPR027417+288-334_294-331_402-485_407-469+
|
— |
PF00009+409-464+Elongation_factor_Tu_GTP_binding_domain
|
— |
PTHR42908+296-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
565-565
|
1.000
|
1-564
|
4v6w_Az
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
64080.710
|
9.292
|
31.000
|
23.186
|
10.619
|
44.425
|
55.575
|
14.867
|
8.319
|
51.504
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
183.721
|
65.189
|
147.725
|
165.406
|
342.671
|
194.977
|
393.272
|
100.005
|
6.439
|
270.483
|
157.321
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
1.206
|
0.274
|
1.020
|
-0.800
|
1.022
|
-1.071
|
2.118
|
— |
4.857
|
— | — | — |
No JSON data available for plots.