Hg_chrom2_TN10mRNA_3493
Organism: Heterodera glycines Gene Locus: chr2:7101690-7102105 Feature type: polypeptideProtein Sequence
Length: 63
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 0.369 | 0.289 | 4.926 | 0.0 | 0.814 | 0.567 | 1.587 | 3.175 | 1.931 | 0.0 | 2.801 | 1.764 | 0.916 | 0.972 | 0.0 | 0.781 | 0.962 | 1.221 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3322
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.064
|
0.135
|
0.051
|
0.155
|
0.359
|
0.566
|
0.703
|
0.010
|
0.686
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001145
|
5.000
|
0.000
|
0.000
|
— | — |
P34655.2 UPF0057 membrane protein ZK632.10 [Caenorhabditis elegans]
|
KAI1716476.1 glycosyl hydrolase family 47 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.696|GO:0005575_0.629|GO:0110165_0.621|GO:0050896_0.535
|
IPR000612+1-54_7-55_12-27+
|
— |
PF01679+7-55+Proteolipid_membrane_potential_modulator
|
— |
PTHR21659+1-54+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-63
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
7152.950
|
7.778
|
3.000
|
9.524
|
14.286
|
19.048
|
80.952
|
7.937
|
1.587
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
340.673
|
278.691
|
367.499
|
509.945
|
646.732
|
449.901
|
437.429
|
407.999
|
99.176
|
254.238
|
187.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.168
|
0.735
|
0.582
|
0.311
|
-0.509
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.