Hg_chrom2_TN10mRNA_3499
Organism: Heterodera glycines Gene Locus: chr2:7116536-7118345 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.123 | 0.462 | 0.775 | 0.98 | 1.373 | 2.185 | 2.198 | 0.426 | 0.442 | 0.729 | 1.033 | 1.504 | 0.395 | 1.694 | 1.102 | 0.568 | 0.605 | 0.603 | 0.219 | 0.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3326
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.107
|
— | — |
0.050
|
0.109
|
0.006
|
0.108
|
0.488
|
0.224
|
0.408
|
0.002
|
0.670
|
0.338
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006898
|
1.000
|
1.000
|
Hsc_gene_3352.t1
|
Hsc_gene_3352.t1
|
— | — |
KAF7638729.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.500
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+5-57_11-56+|IPR008160+173-231_238-297+|IPR050632+12-309+
|
SM01088+5-57+
|
PF01391+173-231_238-297+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-56+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
55-352
|
1.000
|
1-54
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
36209.380
|
6.685
|
0.500
|
25.568
|
3.409
|
43.750
|
56.250
|
13.068
|
12.500
|
57.670
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
brown
|
321.766
|
640.235
|
301.813
|
235.884
|
230.587
|
235.327
|
521.503
|
1515.356
|
36.617
|
0.000
|
15.693
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.316
|
-1.578
|
-0.245
|
— | — |
1.160
|
2.595
|
-1.401
|
— | — |
7.241
|
— | — |
No JSON data available for plots.