Hg_chrom2_TN10mRNA_3502
Organism: Heterodera glycines Gene Locus: chr2:7129554-7132727 Feature type: polypeptideProtein Sequence
Length: 647
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.665 | 1.15 | 1.012 | 0.16 | 1.056 | 0.951 | 0.938 | 1.468 | 1.236 | 0.982 | 0.703 | 1.182 | 1.46 | 1.219 | 1.199 | 0.949 | 1.14 | 0.913 | 2.021 | 0.955 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3329
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.429
|
0.170
|
0.022
|
0.521
|
0.220
|
0.315
|
0.215
|
0.052
|
0.264
|
0.489
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006900
|
1.000
|
1.000
|
Hsc_gene_3342.t1
|
Hsc_gene_3342.t1
|
— | — |
KAI1706098.1 beta-fructosidase [Ditylenchus destructor]
|
WP_221167540
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0003674_0.728|GO:0003824_0.645|GO:0008150_0.593|GO:0005575_0.570|GO:0110165_0.567
|
IPR001362+174-600+|IPR013148+174-485+|IPR013189+571-634+|IPR013320+552-639+|IPR023296+156-508_171-481+|IPR051214+167-639+
|
SM00640+174-600+
|
PF00251+174-485+Glycosyl_hydrolases_family_32_N-terminal_domain|PF08244+571-634+Glycosyl_hydrolases_family_32_C_terminal
|
— |
PTHR43101+167-639+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;635-647
|
1.000
|
61-634
|
2qqu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
73252.510
|
6.553
|
0.500
|
25.348
|
14.065
|
47.604
|
52.396
|
13.447
|
11.901
|
50.541
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2279.211
|
28.491
|
1912.836
|
2432.368
|
3446.626
|
3184.346
|
2869.151
|
3557.254
|
1169.103
|
2558.070
|
1962.799
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.845
|
6.280
|
0.453
|
0.471
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.