Hg_chrom2_TN10mRNA_3511
Organism: Heterodera glycines Gene Locus: chr2:7162956-7164950 Feature type: polypeptideProtein Sequence
Length: 449
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.57 | 1.088 | 1.255 | 1.075 | 0.742 | 1.371 | 0.875 | 1.336 | 1.435 | 0.993 | 0.81 | 0.655 | 1.175 | 0.814 | 1.682 | 1.145 | 1.168 | 0.607 | 1.028 | 0.917 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3338
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
PSNKRRG
|
— | — | — | — |
1-24
|
0.834
|
0.867
|
0.000
|
0.000
|
0.168
|
0.139
|
0.093
|
0.127
|
0.126
|
0.035
|
0.067
|
0.016
|
0.161
|
0.879
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003345
|
2.000
|
1.000
|
Hsc_gene_3333.t1
|
Hsc_gene_3333.t1
|
— |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
KAI1722970.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.779|GO:0005575_0.650|GO:0110165_0.650|GO:0003674_0.598|GO:0032501_0.546
|
IPR000742+356-367+|IPR001506+133-333_142-333_164-182_221-239_240-257_279-294_319-332+|IPR006026+138-284+|IPR017050+9-449+|IPR024079+78-335+|IPR034035+144-331+
|
SM00235+138-284+
|
PF01400+142-333+Astacin_(Peptidase_family_M12A)
|
G3DSA:3.40.390.10:FF:000028+79-335+Zinc_metalloproteinase
|
PTHR10127+85-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-449
|
4gwn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
50900.310
|
8.681
|
16.000
|
27.617
|
11.359
|
52.784
|
47.216
|
16.258
|
11.359
|
50.334
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
4.423
|
0.829
|
0.504
|
7.232
|
19.991
|
10.305
|
8.732
|
4.005
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.975
|
3.941
|
1.428
|
— | — | — | — | — | — | — | — | — |