SCN Proteipedia

Hg_chrom2_TN10mRNA_3513

Organism: Heterodera glycines Gene Locus: chr2:7167738-7171766 Feature type: polypeptide

Protein Sequence

Length: 602

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.56	1.082	0.876	0.859	1.606	1.065	0.831	0.914	1.513	1.235	1.485	0.684	1.154	0.767	1.831	0.736	0.79	0.68	0.767	0.342	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3340	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKK,KKPR,RRGFDPPALLFLQSKDRAK,KPSKKDRKRLKRVAPKRKNLFPNWGKLKHKILIDTKESKIKICKRKERRKKEERESSEKGKGGGRKTGREKADTNRLTINGKHRKHRKKKSNSEEKRTEKDGQQKESKR	—	—	—	—	—	—	0.000	—	—	0.890	0.083	0.012	0.197	0.053	0.012	0.021	0.001	0.046	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006907	1.000	1.000	Hsc_gene_3349.t1	—	—	Q9Y2R4.4 Probable ATP-dependent RNA helicase DDX52 [Homo sapiens]	KAI1713701.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003724\|GO:0005524	GO:0005575_0.835\|GO:0110165_0.835\|GO:0005622_0.798\|GO:0003674_0.736\|GO:0008150_0.719\|GO:0043226_0.715\|GO:0043229_0.702\|GO:0009987_0.670\|GO:0016020_0.661\|GO:0005488_0.600\|GO:0043227_0.585\|GO:0043231_0.562\|GO:0005737_0.532\|GO:0008152_0.526\|GO:0043170_0.526\|GO:0097159_0.526\|GO:0009058_0.523\|GO:0009059_0.523\|GO:0044237_0.523\|GO:0044249_0.523\|GO:0010467_0.508	IPR001650+329-492_343-453_370-453+\|IPR011545+121-306+\|IPR014001+116-333_128-318+\|IPR014014+99-125+\|IPR027417+63-319_182-471_320-496+\|IPR050079+42-597+	SM00487+116-333+\|SM00490+370-453+	PF00270+121-306+DEAD/DEAH_box_helicase\|PF00271+343-453+Helicase_conserved_C-terminal_domain	—	PTHR47959+42-597+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-88;528-602	1.000	89-527	2rb4_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.750	69111.380	9.958	31.500	35.050	8.140	53.821	46.179	20.598	14.452	42.193

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkgrey	1961.052	1467.926	1780.349	1407.315	1310.999	1448.870	1580.139	1407.411	1943.123	3221.132	2673.414

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.198	-0.230	-0.135	0.159	—	—	0.311	—	—	—	—	—

No JSON data available for plots.

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