Hg_chrom2_TN10mRNA_3514
Organism: Heterodera glycines Gene Locus: chr2:7172030-7172674 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.651 | 0.381 | 0.482 | 0.816 | 0.538 | 0.333 | 2.098 | 1.554 | 2.457 | 0.318 | 2.879 | 3.302 | 0.403 | 0.999 | 0.799 | 1.032 | 0.742 | 1.076 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3341
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
22-42
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.142
|
0.079
|
0.007
|
0.076
|
0.419
|
0.445
|
0.649
|
0.012
|
0.428
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006908
|
1.000
|
1.000
|
Hsc_gene_3348.t1
|
Hsc_gene_3348.t1
|
— | — |
KAI1722734.1 transmembrane fragile-X-F protein [Ditylenchus destructor]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.937|GO:0042592_0.700|GO:0048878_0.693|GO:0019725_0.689|GO:0055082_0.684|GO:0098771_0.683|GO:0050801_0.682|GO:0055080_0.682|GO:0006873_0.681|GO:0030003_0.681|GO:0006874_0.670|GO:0055074_0.670|GO:0005575_0.642|GO:0110165_0.642|GO:0016020_0.610|GO:0005886_0.587|GO:0071944_0.587|GO:0005622_0.536|GO:0005737_0.536
|
IPR019396+17-142+
|
— | — | — |
PTHR13568+17-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
16551.800
|
7.436
|
3.000
|
18.182
|
18.881
|
34.965
|
65.035
|
11.189
|
6.993
|
37.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellowgreen
|
199.235
|
98.613
|
186.096
|
133.534
|
110.282
|
191.594
|
105.616
|
167.018
|
256.291
|
307.151
|
285.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
0.300
|
-0.370
|
-0.308
|
0.812
|
-0.852
|
— |
-0.521
|
— | — | — | — | — |
No JSON data available for plots.