Hg_chrom2_TN10mRNA_3516
Organism: Heterodera glycines Gene Locus: chr2:7174505-7175718 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.425 | 0.773 | 1.148 | 0.573 | 0.664 | 1.363 | 0.791 | 1.495 | 1.329 | 1.616 | 0.403 | 1.563 | 1.477 | 1.15 | 1.559 | 0.759 | 0.926 | 1.258 | 0.511 | 1.173 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3343
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.775
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.619
|
0.214
|
0.207
|
0.746
|
0.214
|
0.303
|
0.149
|
0.011
|
0.089
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001146
|
3.000
|
2.000
|
Hsc_gene_21595.t1;Hsc_gene_21599.t1
|
Hsc_gene_21595.t1;Hsc_gene_21599.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7639056.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.802|GO:0005575_0.748|GO:0003674_0.747|GO:0110165_0.745|GO:0009987_0.736|GO:0005622_0.672|GO:0003824_0.652|GO:0005737_0.601|GO:0016020_0.591|GO:0016787_0.580|GO:0140096_0.573|GO:0016788_0.558|GO:0016791_0.546|GO:0042578_0.546|GO:0004721_0.541|GO:0043226_0.524|GO:0065007_0.521|GO:0043229_0.511|GO:0050789_0.508
|
IPR004843+56-253+|IPR006186+28-301_56-83_85-112_118-142_119-124_156-182_186-213_243-263_265-281+|IPR029052+17-299_28-299+|IPR050341+28-291+
|
SM00156+28-301+
|
PF00149+56-253+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+28-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
4iyp_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
34419.750
|
7.452
|
4.500
|
23.588
|
12.957
|
43.189
|
56.811
|
13.289
|
10.299
|
46.844
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
154.389
|
12.942
|
30.567
|
64.362
|
71.645
|
168.320
|
76.659
|
140.376
|
4.461
|
460.280
|
264.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.010
|
2.178
|
1.182
|
— |
1.246
|
-1.126
|
— | — | — |
3.974
|
— | — | — |
No JSON data available for plots.