SCN Proteipedia

Hg_chrom2_TN10mRNA_3519

Organism: Heterodera glycines Gene Locus: chr2:7183010-7189011 Feature type: polypeptide

Protein Sequence

Length: 949

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.747	0.882	0.92	0.981	1.493	0.838	0.665	1.423	1.218	1.239	0.83	1.86	1.2	0.79	1.548	0.918	0.76	1.086	0.811	0.775	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3346	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	RKRLIRQTENMNRRHRH	—	—	—	—	—	—	0.000	—	—	0.554	0.386	0.017	0.566	0.058	0.061	0.062	0.010	0.043	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003343	2.000	1.000	Hsc_gene_3335.t1	Hsc_gene_3335.t1	—	Q17632.2 Probable exosome complex exonuclease RRP44 [Caenorhabditis elegans]	KAI1715438.1 RNB domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0004540	GO:0008150_0.905\|GO:0005575_0.849\|GO:0110165_0.841\|GO:0005622_0.769\|GO:0009987_0.758\|GO:0003674_0.726\|GO:0008152_0.682\|GO:0044238_0.659\|GO:0043170_0.644\|GO:0005737_0.625\|GO:0065007_0.615\|GO:0003824_0.607\|GO:0006139_0.607\|GO:0050789_0.607\|GO:0090304_0.592\|GO:0005488_0.591\|GO:0044237_0.585\|GO:0009058_0.584\|GO:0016070_0.584\|GO:0050794_0.582\|GO:0043226_0.581\|GO:0044249_0.565\|GO:0009056_0.560\|GO:0016020_0.560\|GO:0043229_0.560\|GO:0016787_0.550\|GO:0009059_0.549\|GO:0009057_0.546\|GO:0010467_0.541\|GO:0034655_0.536\|GO:0141188_0.535\|GO:0006401_0.531\|GO:0016788_0.518\|GO:0004518_0.512\|GO:0004527_0.507\|GO:0008408_0.507	IPR001900+479-807_479-808+\|IPR012340+223-433_406-846_861-932+\|IPR022966+775-799+\|IPR033771+226-323+\|IPR041505+383-450+\|IPR050180+22-931+	SM00955+479-808+	PF00773+479-807+RNB_domain\|PF17216+226-323+Rrp44-like_cold_shock_domain\|PF17849+383-450+Dis3-like_cold-shock_domain_2_(CSD2)	G3DSA:2.40.50.700:FF:000001+365-436+Exosome_complex_exonuclease_exoribonuclease_(Rrp44)	PTHR23355+22-931+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	302-349	2.000	1-301;350-949	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.546	108284.210	6.771	4.500	29.926	10.854	48.051	51.949	15.911	14.015	46.048

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	blue	153.028	42.548	32.676	33.230	36.816	31.690	359.472	248.133	15.659	363.540	214.448

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.614	-0.494	—	—	—	3.515	2.864	0.678	-4.677	—	-3.025	—	—

No JSON data available for plots.

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