SCN Proteipedia

Hg_chrom2_TN10mRNA_3524

Organism: Heterodera glycines Gene Locus: chr2:7202074-7206323 Feature type: polypeptide

Protein Sequence

Length: 735

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.902	0.728	0.866	0.281	1.315	1.081	1.069	0.816	1.3	1.066	1.051	2.161	1.663	0.89	1.249	0.7	0.87	1.031	0.523	0.6	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3351	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KKAPCILFIDEIDAVGRKR	18-42	0.997	6-56	0.943	—	—	0.000	—	—	0.090	0.866	0.029	0.103	0.341	0.121	0.131	0.045	0.091	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006912	1.000	1.000	Hsc_gene_3329.t1	Hsc_gene_3329.t1	—	Q9N3T5.2 AFG3-like protein spg-7 [Caenorhabditis elegans]	KAF7637023.1 AAA domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508\|GO:0008270\|GO:0016020\|GO:0016887	GO:0005575_0.901\|GO:0110165_0.899\|GO:0016020_0.824\|GO:0008150_0.787\|GO:0005622_0.780\|GO:0005737_0.738\|GO:0043226_0.719\|GO:0043229_0.715\|GO:0043227_0.656\|GO:0009987_0.634\|GO:0043231_0.633\|GO:0008152_0.546\|GO:0044238_0.533	IPR000642+497-678+\|IPR003593+275-416+\|IPR003959+280-413+\|IPR003960+384-402+\|IPR005936+1-704_91-675+\|IPR011546+77-161+\|IPR027417+225-414_236-487+\|IPR037219+492-683_497-688+\|IPR041569+443-482+\|IPR050928+80-730+	SM00382+275-416+	PF00004+280-413+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF01434+497-678+Peptidase_family_M41\|PF06480+77-161+FtsH_Extracellular\|PF17862+443-482+AAA+_lid_domain	G3DSA:1.10.8.60:FF:000019+415-491+AFG3-like_AAA_ATPase_2\|G3DSA:1.20.58.760:FF:000003+493-684+AFG3-like_AAA_ATPase_2\|G3DSA:3.40.50.300:FF:000001+229-413+ATP-dependent_zinc_metalloprotease_FtsH	PTHR43655+80-730+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	686-735	1.000	1-685	6nyy_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.702	81940.300	8.219	9.000	27.347	10.340	44.898	55.102	14.694	12.653	47.075

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	4224.871	3828.185	3595.162	5342.826	6638.421	4673.762	4233.534	2563.238	4553.502	3490.512	3946.079

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.320	0.344	0.680	0.281	-0.491	—	-0.970	0.866	—	—	—	—	—

No JSON data available for plots.

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