Hg_chrom2_TN10mRNA_3526
Organism: Heterodera glycines Gene Locus: chr2:7234536-7247871 Feature type: polypeptideProtein Sequence
Length: 3,239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.134 | 1.078 | 0.649 | 1.214 | 1.116 | 0.853 | 1.22 | 1.159 | 1.264 | 0.608 | 0.926 | 1.389 | 1.176 | 1.512 | 1.059 | 0.774 | 0.879 | 0.665 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3353
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRRS,RHRR,RKRR,RHAKRKR,RRGGGEEEEKEKTSKR,RRNRRKKKGRGTEEKP,KRQNSNEMNERRNRRKKKG
|
22-43
|
0.992
|
36-86
|
0.999
|
— | — |
0.000
|
— | — |
0.210
|
0.040
|
0.021
|
0.296
|
0.111
|
0.200
|
0.263
|
0.027
|
0.782
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006913
|
1.000
|
1.000
|
Hsc_gene_3327.t1
|
Hsc_gene_3327.t1
|
— |
Q19319.4 Cadherin-4 [Caenorhabditis elegans]
|
KAH7717993.1 Protocadherin Fat 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020
|
GO:0008150_0.900|GO:0005575_0.851|GO:0110165_0.851|GO:0009987_0.807|GO:0016020_0.693|GO:0032501_0.657|GO:0065007_0.640|GO:0032502_0.626|GO:0048856_0.626|GO:0050789_0.624|GO:0071944_0.564|GO:0005622_0.551|GO:0007275_0.549|GO:0005886_0.530|GO:0048731_0.528|GO:0050794_0.525
|
IPR000152+2814-2825+|IPR000742+2413-2470_2472-2517_2475-2517_2505-2516_2745-2797_2748-2797_2785-2796_2799-2835_2802-2835_2823-2834_2839-2877_2842-2877_2865-2876+|IPR001791+2533-2741_2535-2677_2554-2723_2562-2662+|IPR001881+2799-2835_2839-2877+|IPR002126+101-222_129-220_223-348_244-346_461-569_598-662_600-712_714-832_735-830_833-936_837-926_854-934_876-895_937-1050_943-1037_958-1046_1051-1156_1056-1145_1072-1154_1156-1185_1157-1266_1161-1256_1178-1264_1233-1245_1245-1264_1490-1605_1820-1833_1823-1949_1854-1947_1880-1906_1950-2075_1954-2065_1971-2073_2057-2074_2085-2184_2098-2178_2196-2290_2202-2274+|IPR013320+2499-2665+|IPR015919+101-222_211-305_590-672_708-824_820-935_930-1036_1044-1156_1150-1266_1259-1352_1614-1689_1819-1909_1937-2075_2069-2171_2176-2266+|IPR020894+210-220_1254-1264_2063-2073+|IPR050174+1380-1701+
|
SM00112+129-220_244-346_598-662_735-830_854-934_958-1046_1072-1154_1178-1264_1854-1947_1971-2073_2098-2178_2202-2274+|SM00179+2799-2835_2839-2877+|SM00181+2413-2470_2475-2517_2748-2797_2802-2835_2842-2877+|SM00282+2554-2723+
|
PF00028+837-926_943-1037_1056-1145_1161-1256_1954-2065+Cadherin_domain|PF02210+2562-2662+Laminin_G_domain
|
G3DSA:2.60.40.60:FF:000020+1944-2079+Dachsous_cadherin-related_1b|G3DSA:2.60.40.60:FF:000037+1153-1261+FAT_atypical_cadherin_1|G3DSA:2.60.40.60:FF:000058+828-931+FAT_atypical_cadherin_3
|
PTHR24028+1380-1701+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;2940-3239
|
1.000
|
6-2939
|
7alj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
359658.330
|
6.138
|
-18.500
|
27.076
|
9.416
|
48.441
|
51.559
|
13.862
|
13.214
|
51.374
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
3151.015
|
6881.406
|
3277.737
|
3126.871
|
3018.927
|
3075.950
|
1897.572
|
2451.696
|
1300.647
|
3911.396
|
2792.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.299
|
-1.275
|
— | — | — |
-0.688
|
-0.428
|
— |
-1.700
|
— | — | — | — |
No JSON data available for plots.