SCN Proteipedia

Hg_chrom2_TN10mRNA_3528

Organism: Heterodera glycines Gene Locus: chr2:7249898-7254281 Feature type: polypeptide

Protein Sequence

Length: 617

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.697	1.47	0.648	0.671	1.54	0.914	0.733	0.891	0.648	1.095	1.154	1.525	1.035	1.714	1.389	1.366	0.797	0.761	0.249	0.286	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3355	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.939

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRGGAPRKEK,RRFLMVLLSKKSRKV,KKKPNCDQKKEQSRKRKGE,RKRKGEFSGQLTQAKTIKR,KRDTDEPTECQRTGIKKAK	—	—	—	—	—	—	0.000	—	—	0.950	0.118	0.010	0.226	0.038	0.024	0.031	0.004	0.024	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006915	1.000	1.000	Hsc_gene_3325.t1	Hsc_gene_3325.t1	—	Q20619.2 Transcription factor efl-3 [Caenorhabditis elegans]	KAH7729791.1 Protein EFL-3 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0005667\|GO:0006355\|GO:0006357	GO:0008150_0.907\|GO:0065007_0.868\|GO:0009987_0.862\|GO:0050789_0.862\|GO:0050794_0.856\|GO:0005575_0.814\|GO:0110165_0.814\|GO:0005622_0.776\|GO:0003674_0.747\|GO:0005488_0.747\|GO:0008152_0.736\|GO:0019222_0.736\|GO:0016020_0.734\|GO:0043226_0.731\|GO:0043170_0.727\|GO:0060255_0.724\|GO:0009058_0.719\|GO:0009059_0.719\|GO:0044237_0.719\|GO:0044249_0.719\|GO:0031323_0.712\|GO:0043229_0.705\|GO:0010467_0.689\|GO:0009889_0.678\|GO:0010468_0.678\|GO:0010556_0.678\|GO:0031326_0.678\|GO:0003676_0.670\|GO:0097159_0.670\|GO:0043227_0.667\|GO:0043231_0.639\|GO:0044238_0.627\|GO:0080090_0.627\|GO:0005634_0.617\|GO:0003677_0.614\|GO:0006139_0.611\|GO:0090304_0.611\|GO:0034654_0.603\|GO:0141187_0.600\|GO:0019219_0.597\|GO:0016070_0.576\|GO:0032774_0.576\|GO:0048518_0.565\|GO:0051252_0.561\|GO:0048522_0.556\|GO:0048519_0.547\|GO:2001141_0.547\|GO:0006351_0.546\|GO:0006355_0.545\|GO:0032502_0.529\|GO:0048856_0.529\|GO:0048523_0.515\|GO:0043565_0.507	IPR003316+99-166_100-166_253-338_255-323+\|IPR015633+55-469+\|IPR036388+95-169_250-332+\|IPR036390+101-167_256-323+	SM01372+99-166_253-338+	PF02319+100-166_255-323+E2F/DP_family_winged-helix_DNA-binding_domain	G3DSA:1.10.10.10:FF:000832+96-168+E2F-like_(Mammalian_transcription_factor)	PTHR12081+55-469+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-148;347-617	1.000	149-346	1cf7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.950	68422.400	8.843	15.500	29.011	6.807	53.323	46.677	16.207	12.804	52.350

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkorange	338.514	648.441	572.399	438.648	378.768	152.516	354.841	262.390	218.675	263.992	244.571

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.409	-0.701	-0.275	-0.245	-1.297	1.228	0.678	0.578	—	—	—	—	—

No JSON data available for plots.

Back to Browser