Hg_chrom2_TN10mRNA_3529
Organism: Heterodera glycines Gene Locus: chr2:7259600-7262902 Feature type: polypeptideProtein Sequence
Length: 719
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 0.776 | 1.366 | 0.288 | 1.298 | 0.713 | 1.59 | 0.487 | 1.051 | 0.865 | 0.948 | 0.982 | 1.275 | 0.776 | 1.419 | 1.172 | 0.958 | 0.927 | 0.642 | 0.409 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3356
|
— | — |
2.222
|
2.000
|
2.000
|
2.000
|
2.000
|
4.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.495
|
0.231
|
0.032
|
0.632
|
0.090
|
0.046
|
0.060
|
0.003
|
0.121
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003347
|
2.000
|
1.000
|
Hsc_gene_3323.t1
|
Hsc_gene_3322.t1;Hsc_gene_3323.t1
|
— |
Q3MSQ8.1 Probable ATP-dependent RNA helicase DDX4 [Pelophylax lessonae]
|
KAI1730199.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.861|GO:0110165_0.855|GO:0005622_0.780|GO:0008150_0.727|GO:0005737_0.694|GO:0003674_0.681|GO:0043226_0.675|GO:0043229_0.645|GO:0009987_0.613|GO:0005488_0.569
|
IPR001650+474-628_495-589_508-589+|IPR011545+251-430+|IPR014001+246-456_258-442+|IPR014014+227-255+|IPR027417+195-442_306-600_443-631+
|
SM00487+246-456+|SM00490+508-589+
|
PF00270+251-430+DEAD/DEAH_box_helicase|PF00271+495-589+Helicase_conserved_C-terminal_domain
|
— |
PTHR47958+221-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-188;615-719
|
1.000
|
189-614
|
5nt7_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
77462.190
|
5.103
|
-11.500
|
29.485
|
7.789
|
49.652
|
50.348
|
14.186
|
15.299
|
55.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
936.656
|
1207.524
|
530.676
|
652.168
|
845.184
|
565.806
|
897.243
|
379.501
|
398.072
|
1895.028
|
1253.476
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.418
|
-1.026
|
0.408
|
0.342
|
-0.564
|
0.675
|
-0.679
|
1.383
|
-2.343
|
— | — | — | — |
No JSON data available for plots.