Hg_chrom2_TN10mRNA_3538
Organism: Heterodera glycines Gene Locus: chr2:7305764-7309174 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.023 | 0.945 | 0.414 | 0.6 | 0.718 | 1.19 | 1.2 | 1.244 | 1.622 | 0.909 | 2.353 | 1.0 | 0.692 | 0.898 | 1.086 | 0.59 | 1.273 | 0.308 | 0.353 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.623
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.437
|
0.372
|
0.105
|
0.650
|
0.226
|
0.208
|
0.197
|
0.043
|
0.109
|
0.421
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006921
|
1.000
|
1.000
|
Hsc_gene_3315.t1
|
Hsc_gene_3315.t1
|
— |
G4N292.1 Short-chain dehydrogenase RED3 [Pyricularia oryzae 70-15]
|
KAI1716666.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.841|GO:0110165_0.832|GO:0005622_0.707|GO:0003674_0.665|GO:0016020_0.662|GO:0008150_0.653|GO:0005737_0.620|GO:0043226_0.576|GO:0003824_0.552|GO:0043229_0.547|GO:0043227_0.520
|
IPR002347+8-25_9-212_86-97_140-156_146-154_175-194_194-211+|IPR020904+162-190+|IPR036291+8-250+|IPR051468+8-242+
|
— |
PF00106+9-212+short_chain_dehydrogenase
|
— |
PTHR43544+8-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
26616.000
|
9.129
|
7.000
|
21.600
|
7.600
|
40.000
|
60.000
|
12.800
|
8.800
|
54.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
830.299
|
1615.158
|
1059.935
|
732.208
|
573.511
|
634.302
|
1448.807
|
1154.473
|
587.042
|
485.379
|
528.949
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.837
|
-1.278
|
-0.425
|
-0.385
|
0.160
|
1.203
|
0.757
|
0.472
|
— | — | — | — | — |
No JSON data available for plots.