Hg_chrom2_TN10mRNA_3539
Organism: Heterodera glycines Gene Locus: chr2:7309330-7310898 Feature type: polypeptideProtein Sequence
Length: 294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 0.949 | 0.866 | 0.586 | 0.907 | 0.872 | 0.648 | 1.361 | 0.907 | 1.149 | 0.928 | 3.601 | 1.323 | 1.112 | 1.041 | 1.069 | 1.171 | 1.082 | 0.785 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3366
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.170
|
0.937
|
0.016
|
0.167
|
0.026
|
0.035
|
0.073
|
0.002
|
0.038
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006922
|
1.000
|
1.000
|
Hsc_gene_3314.t1
|
Hsc_gene_3314.t1
|
— |
Q9Y399.1 Small ribosomal subunit protein uS2m [Homo sapiens]
|
CDJ87300.1 Ribosomal protein S2 domain containing protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015935
|
GO:0005575_0.891|GO:0110165_0.888|GO:0016020_0.750|GO:0005622_0.746|GO:0005737_0.711|GO:0043226_0.705|GO:0043229_0.689|GO:0043227_0.612|GO:0043231_0.599
|
IPR001865+88-106_91-189_91-266_119-128_169-186_195-267_218-229_239-253+|IPR005706+81-285_84-268+|IPR023591+90-271+
|
— |
PF00318+91-189_195-267+Ribosomal_protein_S2
|
— |
PTHR12534+81-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-294
|
1.000
|
1-270
|
7pnw_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
33024.240
|
8.344
|
7.000
|
24.150
|
10.884
|
46.259
|
53.741
|
13.946
|
10.204
|
50.340
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1058.171
|
783.613
|
1277.123
|
1211.420
|
1513.958
|
1262.381
|
1861.925
|
1068.225
|
1090.797
|
444.408
|
721.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.475
|
0.491
|
— |
0.290
|
-0.248
|
0.572
|
-0.346
|
0.945
|
— | — | — | — | — |
No JSON data available for plots.