SCN Proteipedia

Hg_chrom2_TN10mRNA_3541

Organism: Heterodera glycines Gene Locus: chr2:7319123-7321628 Feature type: polypeptide

Protein Sequence

Length: 435

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.882	1.337	0.627	0.872	0.843	2.358	0.766	2.529	0.664	1.212	1.01	1.758	0.958	1.503	1.689	0.69	0.791	0.418	0.354	0.27	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3368	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.637

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRTARHKKQHICRFCRR,RKNARQLRNAEQKGKK.	—	—	14-44	0.995	—	—	0.000	—	—	0.858	0.114	0.006	0.289	0.025	0.013	0.021	0.008	0.068	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006924	1.000	1.000	Hsc_gene_3310.t1	—	—	Q9N5X6.1 Protein odd-skipped-related 2 [Caenorhabditis elegans]	CAG5106407.1 Oidioi.mRNA.OKI2018_I69.chr1.g2828.t1.cds [Oikopleura dioica]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.861\|GO:0032501_0.788\|GO:0032502_0.787\|GO:0048856_0.787\|GO:0007275_0.767\|GO:0048513_0.728\|GO:0048731_0.692\|GO:0050789_0.663\|GO:0065007_0.663\|GO:0009987_0.654\|GO:0050794_0.654\|GO:0008152_0.595\|GO:0009058_0.595\|GO:0009059_0.595\|GO:0010467_0.595\|GO:0043170_0.595\|GO:0044237_0.595\|GO:0044249_0.595\|GO:0006139_0.591\|GO:0016070_0.591\|GO:0019222_0.591\|GO:0032774_0.591\|GO:0034654_0.591\|GO:0044238_0.591\|GO:0080090_0.591\|GO:0090304_0.591\|GO:0141187_0.591\|GO:0031323_0.589\|GO:0060255_0.580\|GO:0009889_0.578\|GO:0031326_0.578\|GO:0010556_0.575\|GO:0010468_0.574\|GO:0019219_0.563\|GO:0051252_0.563\|GO:2001141_0.562\|GO:0048519_0.558\|GO:0006351_0.557\|GO:0006355_0.557\|GO:0048523_0.549\|GO:0005575_0.533\|GO:0006357_0.527\|GO:0006366_0.527\|GO:0005622_0.523\|GO:0110165_0.523	IPR013087+332-354_332-359_334-354_360-382_360-387_362-382_388-411_390-411+\|IPR036236+323-369_354-406+\|IPR050717+36-409+	SM00355+332-354_360-382_388-411+	PF00096+360-382_388-411+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000090+356-382+Odd-skipped-related_transciption_factor_2\|G3DSA:3.30.160.60:FF:001049+383-409+zinc_finger_protein_319	PTHR14196+36-409+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-320;409-435	1.000	321-408	2ee8_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	49263.170	10.673	39.000	28.506	9.885	53.103	46.897	20.000	8.506	45.977

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	744.248	448.778	529.181	310.949	176.071	215.016	281.993	430.597	1061.809	1562.509	1347.923

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.667	-0.660	-0.852	—	0.404	0.900	-0.468	—	—	-3.029	—	—

No JSON data available for plots.

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