Hg_chrom2_TN10mRNA_3544
Organism: Heterodera glycines Gene Locus: chr2:7332791-7337815 Feature type: polypeptideProtein Sequence
Length: 850
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.176 | 1.048 | 0.933 | 1.392 | 0.905 | 0.588 | 1.235 | 0.993 | 1.002 | 1.194 | 1.315 | 0.915 | 1.222 | 1.537 | 1.328 | 0.829 | 0.838 | 0.271 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3371
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,RRRR,PAKKAENSLLKRKSAKSSSSKNRKRPKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.904
|
0.055
|
0.028
|
0.195
|
0.016
|
0.009
|
0.014
|
0.019
|
0.044
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006926
|
1.000
|
1.000
|
Hsc_gene_3305.t1
|
Hsc_gene_3305.t1
|
— | — |
KAI1697075.1 zinc finger protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0009987_0.903|GO:0032501_0.810|GO:0032502_0.804|GO:0048856_0.804|GO:0007275_0.778|GO:0030154_0.756|GO:0048731_0.756|GO:0048869_0.756|GO:0048513_0.721|GO:0009888_0.702|GO:0060429_0.686|GO:0030855_0.681|GO:0002065_0.670|GO:0002067_0.670|GO:0031016_0.670|GO:0031018_0.670|GO:0035270_0.670|GO:0090425_0.670
|
IPR013087+51-71_254-283_302-326_726-748_728-748_754-777+|IPR036236+723-772+|IPR039149+20-443+
|
SM00355+51-71_254-283_302-326_726-748_754-777+
|
— | — |
PTHR21020+20-443+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-195;330-700
|
3.000
|
1-81;196-329;701-850
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
95242.790
|
8.381
|
21.500
|
32.000
|
7.412
|
54.941
|
45.059
|
17.882
|
14.118
|
51.176
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1550.132
|
1912.195
|
1739.208
|
1617.238
|
1530.738
|
1424.714
|
1611.188
|
1484.296
|
1348.923
|
1525.293
|
1449.706
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.367
|
-0.379
|
— |
-0.111
|
— |
0.188
|
— |
0.262
|
— | — | — | — | — |
No JSON data available for plots.