Hg_chrom2_TN10mRNA_3545
Organism: Heterodera glycines Gene Locus: chr2:7338153-7340952 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 1.073 | 0.839 | 0.531 | 1.429 | 1.183 | 0.89 | 0.989 | 0.928 | 0.95 | 0.932 | 1.939 | 1.648 | 0.803 | 1.346 | 0.911 | 0.504 | 0.932 | 0.845 | 1.228 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3372
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RREVMNSFAKAEKLKKRAP
|
4-32
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.099
|
0.961
|
0.011
|
0.197
|
0.065
|
0.061
|
0.093
|
0.019
|
0.019
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006927
|
1.000
|
1.000
|
Hsc_gene_3304.t1
|
Hsc_gene_3304.t1
|
— |
O45924.2 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAI1728829.1 dehydrogenase e1 component domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016624
|
GO:0005575_0.726|GO:0008150_0.672|GO:0110165_0.645|GO:0005622_0.585|GO:0016020_0.568|GO:0005737_0.521|GO:0009987_0.520|GO:0043226_0.519|GO:0043229_0.502
|
IPR001017+111-414+|IPR029061+81-447+|IPR050771+60-450+
|
— |
PF00676+111-414+Dehydrogenase_E1_component
|
G3DSA:3.40.50.970:FF:000015+51-455+2-oxoisovalerate_dehydrogenase_subunit_alpha
|
PTHR43380+60-450+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
51734.670
|
6.950
|
2.500
|
27.912
|
13.187
|
46.593
|
53.407
|
14.725
|
13.187
|
46.374
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
lightcyan
|
1479.491
|
821.073
|
1362.828
|
1279.579
|
1504.566
|
1313.853
|
1563.331
|
1465.639
|
1406.884
|
1926.034
|
1703.541
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
0.503
|
— |
0.202
|
-0.181
|
0.262
|
— |
0.236
|
— | — | — | — | — |
No JSON data available for plots.