SCN Proteipedia

Hg_chrom2_TN10mRNA_3548

Organism: Heterodera glycines Gene Locus: chr2:7344044-7348081 Feature type: polypeptide

Protein Sequence

Length: 667

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.68	1.046	1.09	0.258	1.874	1.192	0.839	0.975	0.833	0.81	1.772	1.235	1.374	0.75	0.979	1.135	0.541	0.84	0.577	0.97	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3375	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.801

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KGKEKEKEGAKKRKKDREEGKEEKGKKEKRKEKEGKKGEKKKDPNAPKR	—	—	—	—	—	—	0.000	—	—	0.961	0.029	0.008	0.243	0.064	0.047	0.031	0.000	0.066	0.072

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006930	1.000	1.000	Hsc_gene_3301.t1	Hsc_gene_3301.t1	—	P41848.1 FACT complex subunit SSRP1-A [Caenorhabditis elegans]	KAF7639324.1 FACT complex subunit SSRP1 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0005634	GO:0008150_0.821\|GO:0005575_0.791\|GO:0009987_0.790\|GO:0110165_0.789\|GO:0005622_0.765\|GO:0043226_0.744\|GO:0043229_0.732\|GO:0016020_0.713\|GO:0043227_0.654\|GO:0043231_0.628\|GO:0065007_0.610\|GO:0003674_0.602\|GO:0005488_0.594\|GO:0050789_0.591\|GO:0050794_0.565\|GO:0005634_0.564	IPR000969+196-212_218-234_241-257_306-319_333-351_351-368_374-390_390-408+\|IPR009071+552-620_553-619+\|IPR011993+2-80_316-421+\|IPR013719+325-415_327-414+\|IPR024954+92-154+\|IPR035417+5-84+\|IPR036910+536-632_541-624+\|IPR038167+81-163+\|IPR048993+185-313+\|IPR050454+3-601+	SM00398+552-620+\|SM01287+325-415+	PF00505+553-619+HMG_(high_mobility_group)_box\|PF03531+92-154+Structure-specific_recognition_protein_(SSRP1)\|PF08512+327-414+Histone_chaperone_Rttp106-like,_middle_domain\|PF17292+5-84+POB3-like_N-terminal_PH_domain\|PF21103+185-313+SSRP1_PH_domain	G3DSA:2.30.29.150:FF:000001+176-315+Fact_complex_subunit_ssrp1\|G3DSA:2.30.29.30:FF:000098+316-423+Fact_complex_subunit_ssrp1	PTHR45849+3-601+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	420-667	1.000	1-419	5ums_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.687	76050.230	6.706	1.500	35.682	10.945	56.072	43.928	18.441	17.241	44.828

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	2589.630	2527.912	2366.153	2775.194	3367.403	2480.627	2964.405	1724.872	3479.797	1892.321	2572.668

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.325	—	0.339	0.247	-0.426	0.268	-0.629	0.924	—	—	—	—	—

No JSON data available for plots.

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