Hg_chrom2_TN10mRNA_3551
Organism: Heterodera glycines Gene Locus: chr2:7355609-7360150 Feature type: polypeptideProtein Sequence
Length: 956
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.411 | 0.685 | 0.83 | 1.464 | 0.858 | 0.785 | 1.046 | 1.232 | 0.989 | 0.967 | 0.923 | 1.54 | 0.764 | 1.345 | 1.315 | 0.823 | 0.856 | 1.126 | 0.554 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3378
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.244
|
0.030
|
0.007
|
0.292
|
0.225
|
0.226
|
0.290
|
0.054
|
0.812
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006933
|
1.000
|
1.000
|
Hsc_gene_21519.t1
|
Hsc_gene_21519.t1
|
— |
P28685.1 Contactin-2 [Gallus gallus]
|
KAH7721320.1 IGCM-2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.850|GO:0008150_0.848|GO:0110165_0.843|GO:0009987_0.761|GO:0016020_0.685|GO:0071944_0.638|GO:0005886_0.559|GO:0071840_0.515|GO:0003674_0.513|GO:0016043_0.506
|
IPR003598+125-186_215-288_321-390_419-478+|IPR003599+1-108_119-195_209-305_315-401_413-489+|IPR003961+495-595_497-581+|IPR007110+1-95_111-195_199-299_308-399_406-481+|IPR013098+122-194+|IPR013783+1-108_121-205_206-311_312-398_399-495_496-589+|IPR036116+492-626+|IPR036179+3-86_104-194_211-338_304-396_399-490+
|
SM00408+125-186_215-288_321-390_419-478+|SM00409+1-108_119-195_209-305_315-401_413-489+
|
PF07679+122-194+Immunoglobulin_I-set_domain|PF13927+307-387+Immunoglobulin_domain
|
— |
PTHR44170+7-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
956-956
|
1.000
|
1-955
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
107503.480
|
7.832
|
14.000
|
27.615
|
10.983
|
51.255
|
48.745
|
15.063
|
12.552
|
49.477
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
932.967
|
1452.019
|
2300.174
|
1263.265
|
431.979
|
404.945
|
573.092
|
2342.581
|
321.134
|
552.858
|
453.548
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.435
|
-0.338
|
-0.757
|
-1.580
|
— |
0.510
|
2.434
|
-1.893
|
— | — | — | — | — |
No JSON data available for plots.