Hg_chrom2_TN10mRNA_3553
Organism: Heterodera glycines Gene Locus: chr2:7367359-7368861 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.107 | 1.353 | 0.411 | 0.942 | 0.458 | 1.276 | 2.083 | 1.323 | 1.126 | 0.586 | 1.225 | 0.909 | 0.916 | 1.276 | 0.85 | 0.634 | 1.263 | 1.832 | 0.875 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3380
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.372
|
— | — |
0.428
|
0.319
|
0.147
|
0.504
|
0.297
|
0.332
|
0.232
|
0.200
|
0.104
|
0.502
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006935
|
1.000
|
1.000
|
Hsc_gene_21522.t2
|
Hsc_gene_21522.t1;Hsc_gene_21522.t2
|
— |
P9WM78.1 Probable polyglutamine synthesis accessory protein MT0602 [Mycobacterium tuberculosis CDC1551]
|
KAI1722333.1 bacterial capsule synthesis protein PGAcap domain-containing protein [Ditylenchus destructor]
|
MDP9292286
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019079+13-297_14-295_14-297+|IPR029052+12-316_103-296+|IPR052169+12-334+
|
SM00854+13-297+
|
PF09587+14-297+Bacterial_capsule_synthesis_protein_PGA_cap
|
— |
PTHR33393+12-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-336
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
37244.040
|
6.140
|
-3.000
|
27.381
|
12.798
|
43.750
|
56.250
|
14.286
|
13.095
|
53.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
2675.021
|
22694.206
|
925.966
|
451.238
|
278.993
|
315.069
|
243.393
|
1125.683
|
507.601
|
1559.561
|
1108.721
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.846
|
-5.790
|
-0.928
|
-0.725
|
— |
-0.362
|
1.736
|
-2.069
|
— | — | — | — | — |
No JSON data available for plots.