Hg_chrom2_TN10mRNA_3554
Organism: Heterodera glycines Gene Locus: chr2:7367359-7371136 Feature type: polypeptideProtein Sequence
Length: 779
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.164 | 1.12 | 0.62 | 0.941 | 0.79 | 1.07 | 1.733 | 1.483 | 1.058 | 0.895 | 0.982 | 1.391 | 0.79 | 0.891 | 1.009 | 0.737 | 1.186 | 1.481 | 0.642 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3380
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.372
|
— | — |
0.389
|
0.148
|
0.056
|
0.687
|
0.174
|
0.223
|
0.207
|
0.074
|
0.172
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003349
|
2.000
|
1.000
|
Hsc_gene_21523.t1
|
Hsc_gene_21522.t1;Hsc_gene_21522.t2;Hsc_gene_21523.t1
|
— |
P9WM78.1 Probable polyglutamine synthesis accessory protein MT0602 [Mycobacterium tuberculosis CDC1551]
|
KAI1722333.1 bacterial capsule synthesis protein PGAcap domain-containing protein [Ditylenchus destructor]
|
KVN02536
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.943|GO:0005575_0.879|GO:0003674_0.874|GO:0110165_0.864|GO:0009987_0.859|GO:0008152_0.812|GO:0003824_0.810|GO:0016020_0.784|GO:0044238_0.776|GO:0044237_0.769|GO:0005622_0.766|GO:0005737_0.764|GO:0065007_0.763|GO:0009058_0.757|GO:0005488_0.753|GO:0050789_0.744|GO:0043170_0.734|GO:0044249_0.733|GO:0050794_0.731|GO:0043226_0.725|GO:0071840_0.722|GO:0016043_0.718|GO:0009059_0.710|GO:0043229_0.710|GO:0016787_0.709|GO:0006139_0.706|GO:0010467_0.702|GO:0048518_0.702|GO:0043227_0.699|GO:0036094_0.698|GO:0048522_0.696|GO:0043167_0.694|GO:0034654_0.693|GO:0043231_0.693|GO:0090304_0.690|GO:0006996_0.687|GO:0016070_0.686|GO:0141187_0.685|GO:0032774_0.684|GO:0043169_0.684|GO:0046872_0.678|GO:0006396_0.676|GO:0007049_0.675|GO:0022402_0.675|GO:0000280_0.674|GO:0016071_0.674|GO:0048285_0.674|GO:0000082_0.670|GO:0000278_0.670|GO:0006397_0.670|GO:0007346_0.670|GO:0008334_0.670|GO:0010564_0.670|GO:0031123_0.670|GO:0031124_0.670|GO:0044770_0.670|GO:0044772_0.670|GO:0044843_0.670|GO:0045787_0.670|GO:0045931_0.670|GO:0051726_0.670|GO:0090068_0.670|GO:0140014_0.670|GO:1900087_0.670|GO:1901987_0.670|GO:1901989_0.670|GO:1901990_0.670|GO:1901992_0.670|GO:1902806_0.670|GO:1902808_0.670|GO:1903047_0.670|GO:2000045_0.670|GO:0016788_0.665|GO:0140640_0.658|GO:0140098_0.655|GO:0004518_0.654|GO:0004519_0.650|GO:0004521_0.650|GO:0004540_0.650|GO:0005634_0.584
|
IPR001279+401-457+|IPR019079+13-297_14-295_14-297+|IPR029052+12-303_104-295+|IPR036866+364-565_402-564_581-752_605-686+|IPR052169+12-328+
|
SM00854+13-297+
|
PF00753+401-457+Metallo-beta-lactamase_superfamily|PF09587+14-297+Bacterial_capsule_synthesis_protein_PGA_cap
|
— |
PTHR33393+12-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-779
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
86144.880
|
6.593
|
1.500
|
25.546
|
12.580
|
45.186
|
54.814
|
13.736
|
11.810
|
52.246
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
2675.021
|
22694.206
|
925.966
|
451.238
|
278.993
|
315.069
|
243.393
|
1125.683
|
507.601
|
1559.561
|
1108.721
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.846
|
-5.790
|
-0.928
|
-0.725
|
— |
-0.362
|
1.736
|
-2.069
|
— | — | — | — | — |
No JSON data available for plots.