Hg_chrom2_TN10mRNA_3556
Organism: Heterodera glycines Gene Locus: chr2:7371182-7373928 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 1.3 | 1.017 | 0.34 | 0.987 | 0.843 | 0.744 | 0.658 | 1.243 | 1.111 | 1.396 | 2.322 | 1.096 | 0.886 | 0.806 | 0.846 | 1.079 | 0.947 | 1.012 | 0.871 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3381
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.756
|
0.179
|
0.360
|
0.212
|
0.093
|
0.070
|
0.319
|
0.119
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006936
|
1.000
|
1.000
|
Hsc_gene_21524.t1
|
Hsc_gene_21524.t1
|
— |
Q4V8F9.1 Hydroxysteroid dehydrogenase-like protein 2 [Rattus norvegicus]
|
KAF7634498.1 SCP2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.633|GO:0008150_0.631|GO:0110165_0.631|GO:0003674_0.627|GO:0005622_0.585|GO:0005737_0.547|GO:0009987_0.506
|
IPR002347+10-208_11-28_92-103_167-186_188-205+|IPR036291+7-243+|IPR051935+1-280+
|
— |
PF00106+10-208+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000301+5-276+Hydroxysteroid_dehydrogenase_like_2
|
PTHR42808+1-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
3kvo_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
33912.040
|
9.162
|
7.000
|
25.987
|
9.539
|
47.368
|
52.632
|
14.474
|
11.513
|
50.329
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2696.372
|
5747.832
|
2747.710
|
1845.880
|
2528.952
|
2646.932
|
2602.637
|
3923.288
|
781.703
|
2944.140
|
2017.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.294
|
-1.776
|
-0.465
|
0.423
|
— | — |
0.463
|
-0.449
|
-2.024
|
— | — | — | — |
No JSON data available for plots.