SCN Proteipedia

Hg_chrom2_TN10mRNA_3557

Organism: Heterodera glycines Gene Locus: chr2:7373936-7387928 Feature type: polypeptide

Protein Sequence

Length: 424

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.658	1.536	1.029	0.813	0.59	1.996	0.702	0.943	1.101	0.829	0.965	1.665	1.114	0.68	0.578	1.786	1.16	0.893	1.633	0.694	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3382	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.835	0.082	0.004	0.556	0.120	0.160	0.101	0.115	0.082	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006937	1.000	1.000	Hsc_gene_21525.t1	Hsc_gene_21525.t1	—	Q2KIG2.1 WD repeat-containing protein 5 [Bos taurus]	XP_042930968.1 Will die slowly protein, putative [Brugia malayi];KAK6112231.1 WD repeat-containing protein 5 [Brugia pahangi];CRZ22707.1 BMA-WDR-5.1 [Brugia malayi];VIO88558.1 Will die slowly protein, putative [Brugia malayi]	No	-0.960

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003714\|GO:0005515	GO:0008150_0.900\|GO:0005575_0.821\|GO:0110165_0.819\|GO:0005622_0.765\|GO:0009987_0.765\|GO:0016020_0.735\|GO:0043226_0.716\|GO:0043229_0.699\|GO:0043227_0.675\|GO:0043231_0.666\|GO:0065007_0.620\|GO:0050789_0.617\|GO:0005634_0.593\|GO:0032991_0.544\|GO:0032502_0.532\|GO:0050794_0.524\|GO:0032501_0.522\|GO:0016043_0.521\|GO:0071840_0.521	IPR001680+124-163_130-163_131-172_166-205_167-205_173-214_208-247_209-247_215-256_250-289_251-288_257-298_292-332_293-332_300-341_335-377_336-377_361-386_380-421_383-420+\|IPR015943+110-424+\|IPR019775+234-248_276-290_319-333_364-378+\|IPR020472+150-164_234-248_364-378+\|IPR036322+122-420+\|IPR045183+45-257+	SM00320+124-163_166-205_208-247_250-289_292-332_335-377_380-421+	PF00400+130-163_167-205_209-247_251-288_293-332_336-377_383-420+WD_domain,_G-beta_repeat	G3DSA:2.130.10.10:FF:000228+113-424+COMPASS-like_H3K4_histone_methylase_component_WDR5A	PTHR22846+45-257+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-127	1.000	128-424	8du4_L	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.864	47021.600	7.327	4.000	20.283	10.377	54.245	45.755	11.085	9.198	55.189

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey60	1864.391	1665.773	1675.552	1465.234	1568.917	1375.393	1833.485	1476.048	2306.573	2279.132	2290.892

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.221	-0.322	—	—	-0.176	0.423	—	0.453	—	—	—	—	—

No JSON data available for plots.

Back to Browser