SCN Proteipedia

Hg_chrom2_TN10mRNA_3560

Organism: Heterodera glycines Gene Locus: chr2:7392663-7398975 Feature type: polypeptide

Protein Sequence

Length: 1,349

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.784	1.431	0.836	0.435	1.038	1.254	0.759	1.186	1.17	1.242	0.719	1.788	1.091	1.112	1.316	1.091	0.887	0.977	0.627	0.785	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3384	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKL,KKKKRK,RKKKKK,PSSKRRR,FRRGGGRRRGFKR	—	—	—	—	—	—	0.000	—	—	0.852	0.284	0.009	0.365	0.060	0.026	0.052	0.005	0.026	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006939	1.000	1.000	Hsc_gene_21526.t1	Hsc_gene_21526.t1	—	Q22307.3 ATP-dependent RNA helicase A [Caenorhabditis elegans]	KAI1716587.1 double-stranded RNA binding motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003725\|GO:0005524	GO:0008150_0.797\|GO:0005575_0.763\|GO:0110165_0.762\|GO:0003674_0.753\|GO:0009987_0.687\|GO:0005622_0.632\|GO:0005488_0.600\|GO:0016020_0.586\|GO:0043226_0.523\|GO:0065007_0.519\|GO:0097159_0.505\|GO:0043229_0.502	IPR001650+665-840_673-799_693-800+\|IPR002464+510-519+\|IPR007502+862-953+\|IPR011545+399-552+\|IPR011709+1029-1108+\|IPR014001+390-577_402-568+\|IPR014720+3-72_4-71_5-63_179-252_180-251_181-250+\|IPR027417+347-567_387-998_649-819+\|IPR044445+3-72+\|IPR044446+177-252+\|IPR048333+863-891+	SM00358+4-71_180-251+\|SM00487+390-577+\|SM00490+693-800+\|SM00847+862-953+	PF00035+5-63_181-250+Double-stranded_RNA_binding_motif\|PF00270+399-552+DEAD/DEAH_box_helicase\|PF00271+673-799+Helicase_conserved_C-terminal_domain\|PF04408+863-891+Helicase_associated_domain_(HA2),_winged-helix\|PF07717+1029-1108+Oligonucleotide/oligosaccharide-binding_(OB)-fold\|PF21010+892-950+Helicase_associated_domain_(HA2),_ratchet-like	G3DSA:3.30.160.20:FF:000028+168-263+ATP-dependent_RNA_helicase_A	PTHR18934+337-1105+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	85-172;593-647;1169-1349	3.000	1-84;173-592;648-1168	3llm_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.822	150951.800	8.070	21.000	24.388	9.785	48.480	51.520	13.566	10.823	50.408

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	2454.501	3035.207	2258.462	2548.656	3000.325	2435.748	2929.061	1675.185	1715.092	2746.129	2304.256

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.656	-0.389	0.283	0.204	-0.286	0.276	-0.644	0.948	—	—	—	—	—

No JSON data available for plots.

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