Hg_chrom2_TN10mRNA_3561
Organism: Heterodera glycines Gene Locus: chr2:7403275-7406788 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.005 | 1.282 | 0.568 | 0.38 | 0.919 | 1.697 | 1.335 | 1.103 | 0.735 | 1.118 | 0.668 | 1.189 | 0.511 | 1.661 | 0.9 | 1.471 | 0.994 | 0.613 | 0.283 | 0.703 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3385
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.831
|
0.101
|
0.010
|
0.427
|
0.047
|
0.038
|
0.063
|
0.007
|
0.096
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006940
|
1.000
|
1.000
|
Hsc_gene_21527.t1
|
Hsc_gene_21527.t1
|
— |
G5EEG9.1 Helix-loop-helix protein hlh-2 [Caenorhabditis elegans]
|
KAI1731557.1 helix-loop-helix DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.960|GO:0009987_0.914|GO:0065007_0.862|GO:0050789_0.849|GO:0050794_0.845|GO:0003674_0.842|GO:0005488_0.827|GO:0005575_0.805|GO:0008152_0.784|GO:0019222_0.784|GO:0031323_0.784|GO:0044237_0.784|GO:0043170_0.774|GO:0060255_0.769|GO:0044238_0.768|GO:0080090_0.768|GO:0009058_0.765|GO:0009059_0.765|GO:0010467_0.765|GO:0044249_0.765|GO:0006139_0.757|GO:0009889_0.754|GO:0010468_0.754|GO:0010556_0.754|GO:0031326_0.754|GO:0034654_0.749|GO:0016070_0.747|GO:0090304_0.747|GO:0032774_0.741|GO:0141187_0.741|GO:0019219_0.737|GO:0051252_0.737|GO:0006351_0.724|GO:0006355_0.722|GO:2001141_0.722|GO:0110165_0.719|GO:0097159_0.712|GO:0003676_0.709|GO:0048518_0.709|GO:0048522_0.707|GO:0005515_0.678|GO:0009893_0.676|GO:0010604_0.673|GO:0005622_0.669|GO:0009891_0.668|GO:0031325_0.667|GO:0031328_0.666|GO:0045935_0.654|GO:0010557_0.652|GO:0051254_0.649|GO:0003677_0.638|GO:1902680_0.637|GO:0043226_0.634|GO:0045893_0.633|GO:0003690_0.630|GO:0043229_0.622|GO:0016020_0.610|GO:0043565_0.601|GO:1990837_0.588|GO:0000976_0.579|GO:0001067_0.579|GO:0032502_0.563|GO:0048856_0.563|GO:0043227_0.528|GO:0032501_0.517|GO:0000977_0.514|GO:0043231_0.511|GO:0006357_0.510|GO:0006366_0.510
|
IPR011598+417-472_418-473_423-478+|IPR036638+404-485_409-480+|IPR051098+385-511+
|
SM00353+423-478+
|
PF00010+418-473+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR11793+385-511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;208-544
|
1.000
|
55-207
|
2ypb_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
57289.770
|
7.756
|
7.000
|
19.669
|
6.801
|
48.162
|
51.838
|
11.029
|
8.640
|
58.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
2038.622
|
966.246
|
785.400
|
519.480
|
266.057
|
146.757
|
548.748
|
311.828
|
2291.368
|
5871.253
|
4337.016
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.529
|
-1.032
|
-0.487
|
-0.997
|
-0.844
|
1.912
|
0.987
|
0.955
|
— |
-1.963
|
-4.052
|
— | — |
No JSON data available for plots.