Hg_chrom2_TN10mRNA_3564
Organism: Heterodera glycines Gene Locus: chr2:7410055-7415966 Feature type: polypeptideProtein Sequence
Length: 1,321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 0.951 | 0.977 | 3.42 | 1.161 | 1.359 | 0.919 | 0.908 | 0.69 | 0.962 | 0.78 | 0.534 | 1.388 | 1.485 | 1.19 | 1.233 | 0.62 | 0.677 | 0.582 | 0.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3388
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRHSDRFVGCDQKKRCP
|
— | — |
10-66
|
0.978
|
— | — |
0.081
|
— | — |
0.114
|
0.088
|
0.027
|
0.322
|
0.074
|
0.153
|
0.271
|
0.065
|
0.299
|
0.764
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006942
|
1.000
|
1.000
|
Hsc_gene_21529.t1
|
Hsc_gene_21529.t1
|
— | — |
KAI1732824.1 thyroglobulin type-1 repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004857|GO:0004867|GO:0005576|GO:0030414
|
— |
IPR000716+525-598_545-587_549-576_550-602_856-934_884-923_884-938_1160-1232_1171-1221_1184-1236+|IPR004094+598-623+|IPR006150+247-290_664-710_1108-1145+|IPR008197+298-347_298-350_410-448_463-521_466-521_467-520_1103-1158_1106-1157_1106-1158+|IPR011061+593-624+|IPR028150+665-710+|IPR036645+297-349_807-852_1102-1156+|IPR036857+521-575_540-594_840-925_856-935_1130-1222_1157-1211+
|
SM00211+550-602_884-938_1184-1236+|SM00217+298-350_410-448_466-521_1106-1158+|SM00289+247-290_664-710_1108-1145+
|
PF00086+545-587_884-923_1171-1221+Thyroglobulin_type-1_repeat|PF00095+298-347_467-520_1106-1157+WAP-type_(Whey_Acidic_Protein)_'four-disulfide_core'|PF02822+598-623+Antistasin_family|PF14625+665-710+Lustrin,_cysteine-rich_repeated_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-204;358-407
|
3.000
|
1-149;205-357;408-1321
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
144525.830
|
6.098
|
-6.000
|
25.132
|
8.251
|
46.934
|
53.066
|
12.793
|
12.339
|
57.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
69.235
|
73.972
|
100.385
|
20.730
|
37.866
|
122.496
|
49.471
|
83.677
|
22.831
|
102.556
|
68.388
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.972
|
-2.165
|
0.839
|
1.707
|
-1.299
|
-0.664
|
— | — | — | — | — | — |
No JSON data available for plots.