Hg_chrom2_TN10mRNA_3566
Organism: Heterodera glycines Gene Locus: chr2:7417641-7422327 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.171 | 0.848 | 0.643 | 1.15 | 0.67 | 0.777 | 1.679 | 1.493 | 1.336 | 0.82 | 1.427 | 1.555 | 0.933 | 1.675 | 0.906 | 0.581 | 0.735 | 1.866 | 0.768 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3390
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.743
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— | — |
88-108
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.118
|
0.109
|
0.159
|
0.331
|
0.559
|
0.153
|
0.837
|
0.054
|
0.108
|
0.299
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006943
|
1.000
|
1.000
|
Hsc_gene_21530.t1
|
Hsc_gene_21530.t1
|
— |
O95395.1 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 [Homo sapiens]
|
KAI6208501.1 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.943|GO:0009987_0.874|GO:0008152_0.816|GO:0044237_0.791|GO:0005575_0.683|GO:0110165_0.680|GO:0003674_0.657|GO:0005622_0.606|GO:0003824_0.572|GO:0065007_0.565|GO:0009058_0.551|GO:0044249_0.532|GO:0043170_0.531|GO:0032501_0.515|GO:0009059_0.506
|
IPR003406+173-436+
|
— |
PF02485+173-436+Core-2/I-Branching_enzyme
|
— |
PTHR46671+135-499+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-536
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
61860.140
|
9.128
|
20.000
|
28.545
|
13.993
|
46.082
|
53.918
|
16.978
|
11.567
|
43.843
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
466.011
|
80.577
|
260.616
|
269.041
|
82.862
|
24.610
|
61.968
|
246.159
|
621.933
|
1187.659
|
945.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.468
|
1.602
|
— |
-1.732
|
-1.736
|
1.343
|
3.222
|
-1.849
|
— | — |
-3.401
|
— | — |
No JSON data available for plots.