Hg_chrom2_TN10mRNA_3567
Organism: Heterodera glycines Gene Locus: chr2:7425528-7430121 Feature type: polypeptideProtein Sequence
Length: 576
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.09 | 1.171 | 1.136 | 0.599 | 1.071 | 0.49 | 0.847 | 1.302 | 1.157 | 1.22 | 0.737 | 2.247 | 1.688 | 0.701 | 1.346 | 0.918 | 0.768 | 0.842 | 1.202 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.285
|
0.321
|
0.047
|
0.646
|
0.122
|
0.294
|
0.233
|
0.070
|
0.193
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000750
|
3.000
|
3.000
|
Hsc_gene_14971.t1;Hsc_gene_21531.t1;Hsc_gene_21531.t2
|
Hsc_gene_14971.t1;Hsc_gene_21531.t1;Hsc_gene_21531.t2
|
— |
P22781.1 Aromatic-L-amino-acid decarboxylase [Cavia porcellus]
|
KAI1717356.1 pyridoxal-dependent decarboxylase conserved domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006520|GO:0016830|GO:0016831|GO:0019752|GO:0030170
|
GO:0008150_0.869|GO:0003674_0.826|GO:0003824_0.718|GO:0008152_0.648|GO:0016829_0.600|GO:0009987_0.589|GO:0016830_0.587|GO:0016831_0.587|GO:0005575_0.556|GO:0110165_0.546|GO:0009058_0.514
|
IPR002129+37-175_251-488+|IPR010977+6-25_49-68_75-94_96-114_115-134_142-162+|IPR015421+84-453+|IPR015422+456-559+|IPR015424+1-547+
|
— |
PF00282+37-175_251-488+Pyridoxal-dependent_decarboxylase_conserved_domain
|
— |
PTHR11999+1-548+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
553-576
|
1.000
|
1-552
|
3k40_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
64560.760
|
6.557
|
0.500
|
26.736
|
12.326
|
44.792
|
55.208
|
14.062
|
12.674
|
49.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
737.824
|
311.766
|
646.805
|
1099.196
|
1221.266
|
618.447
|
554.718
|
576.310
|
113.564
|
1257.115
|
767.022
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
1.681
|
0.874
|
— |
-0.967
|
— | — | — | — |
3.467
|
— | — | — |
No JSON data available for plots.