Hg_chrom2_TN10mRNA_3569
Organism: Heterodera glycines Gene Locus: chr2:7432144-7434183 Feature type: polypeptideProtein Sequence
Length: 339
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 0.892 | 0.644 | 1.017 | 0.836 | 0.832 | 1.054 | 1.327 | 1.18 | 0.837 | 1.386 | 1.909 | 1.393 | 0.794 | 1.505 | 1.054 | 0.677 | 0.715 | 2.496 | 0.954 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3392
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.492
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRKKILEWKKRKKEW,RKKEWTNDMQRYRFDIRKK,KKEWTNDMQRYRFDIRKKW
|
— | — | — | — |
1-26
|
0.775
|
0.780
|
0.000
|
0.000
|
0.187
|
0.267
|
0.039
|
0.331
|
0.058
|
0.038
|
0.090
|
0.010
|
0.117
|
0.775
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006944
|
1.000
|
1.000
|
Hsc_gene_21532.t1
|
Hsc_gene_21532.t1
|
— |
P43510.1 Cathepsin B-like cysteine proteinase 6 [Caenorhabditis elegans]
|
KAF7636296.1 Pept_C1 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0008150_0.749|GO:0005575_0.648|GO:0110165_0.647|GO:0009987_0.558|GO:0003674_0.535
|
IPR000668+62-310_65-293+|IPR013128+62-293+|IPR038765+48-293+
|
SM00645+62-310+
|
PF00112+65-293+Papain_family_cysteine_protease
|
— |
PTHR12411+62-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
2ipp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
38716.740
|
10.389
|
31.500
|
27.729
|
14.159
|
46.313
|
53.687
|
19.174
|
8.555
|
46.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
50.445
|
9.478
|
10.171
|
24.363
|
28.460
|
62.709
|
75.027
|
22.038
|
7.390
|
128.062
|
76.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.226
|
1.366
|
— |
1.156
|
— |
-1.617
|
1.912
|
— | — | — | — | — |