Hg_chrom2_TN10mRNA_3572
Organism: Heterodera glycines Gene Locus: chr2:7438999-7441868 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 1.053 | 0.752 | 1.018 | 1.05 | 1.413 | 0.984 | 0.984 | 1.444 | 1.357 | 0.746 | 1.505 | 1.148 | 0.644 | 1.004 | 0.731 | 1.291 | 0.686 | 1.514 | 0.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3395
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.491
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKENGRWKEAIRKAFR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.428
|
0.310
|
0.037
|
0.628
|
0.172
|
0.224
|
0.241
|
0.044
|
0.142
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003350
|
2.000
|
1.000
|
Hsc_gene_21534.t1
|
Hsc_gene_21534.t1
|
— |
Q21944.1 Probable glycerol kinase [Caenorhabditis elegans]
|
MDD9139403.1 glycerol kinase GlpK [Candidatus Cardinium sp.]
|
No
|
-0.590
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004370|GO:0005975|GO:0006072|GO:0016301
|
GO:0008150_0.879|GO:0005575_0.772|GO:0110165_0.765|GO:0003674_0.725|GO:0005622_0.671|GO:0005737_0.618|GO:0009987_0.612|GO:0016020_0.576|GO:0008152_0.546|GO:0043226_0.508|GO:0003824_0.506
|
IPR000577+1-508+|IPR005999+3-507+|IPR018484+5-254+|IPR018485+264-457+|IPR043129+5-257_256-507+
|
— |
PF00370+5-254+FGGY_family_of_carbohydrate_kinases,_N-terminal_domain|PF02782+264-457+FGGY_family_of_carbohydrate_kinases,_C-terminal_domain
|
G3DSA:3.30.420.40:FF:000108+256-508+Glycerol_kinase,_glycosomal|G3DSA:3.30.420.40:FF:000177+1-254+Glycerol_kinase
|
PTHR10196+5-507+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
56293.480
|
6.794
|
2.000
|
22.244
|
10.039
|
45.276
|
54.724
|
11.811
|
10.433
|
49.213
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2141.983
|
2207.335
|
1439.792
|
694.104
|
2695.492
|
6786.202
|
2175.768
|
5751.856
|
45.829
|
1180.347
|
694.125
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.844
|
-1.806
|
-0.946
|
1.925
|
1.347
|
-1.631
|
— |
-1.262
|
-4.811
|
4.114
|
— | — | — |
No JSON data available for plots.