Hg_chrom2_TN10mRNA_3576
Organism: Heterodera glycines Gene Locus: chr2:7446641-7448232 Feature type: polypeptideProtein Sequence
Length: 333
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.676 | 0.546 | 0.311 | 0.45 | 1.309 | 0.93 | 0.601 | 1.668 | 1.096 | 1.138 | 1.943 | 0.834 | 1.213 | 0.245 | 1.115 | 0.738 | 1.092 | 2.541 | 1.237 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_21537
|
— | — |
9-Not_Clustered
|
0.783
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-22
|
0.997
|
1.000
|
0.000
|
0.000
|
0.243
|
0.144
|
0.021
|
0.514
|
0.170
|
0.287
|
0.234
|
0.004
|
0.263
|
0.689
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006947
|
1.000
|
1.000
|
Hsc_gene_21537.t1
|
Hsc_gene_21537.t1
|
— |
P07103.2 Endoglucanase Z [Dickeya dadantii 3937]
|
AAC48326.1 beta-1,4-endoglucanase-2 precursor [Heterodera glycines]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553|GO:0005975
|
GO:0008150_0.932|GO:0003674_0.863|GO:0008152_0.797|GO:0003824_0.789|GO:0044238_0.766|GO:0043170_0.729|GO:0009056_0.712|GO:0016787_0.705|GO:0005975_0.692|GO:0009057_0.687|GO:0005976_0.685|GO:0016052_0.675|GO:0044042_0.675|GO:0000272_0.674|GO:0009251_0.670|GO:0016798_0.670|GO:0030243_0.670|GO:0030245_0.670|GO:0051273_0.670|GO:0051275_0.670|GO:0004553_0.669|GO:0008810_0.650
|
IPR001547+40-289+|IPR017853+20-326+|IPR018087+153-162+
|
— |
PF00150+40-289+Cellulase_(glycosyl_hydrolase_family_5)
|
— |
PTHR34142+1-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
36668.440
|
9.732
|
12.000
|
15.616
|
11.712
|
40.240
|
59.760
|
9.910
|
5.706
|
52.853
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
35346.306
|
217.256
|
10880.299
|
1719.386
|
210.040
|
163.736
|
82.825
|
1570.944
|
198307.692
|
342.639
|
85184.804
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.416
|
2.846
|
-2.553
|
-3.065
|
-0.345
|
-0.972
|
3.167
|
-4.106
|
9.059
|
-6.706
|
— | — | — |