SCN Proteipedia

Hg_chrom2_TN10mRNA_3578

Organism: Heterodera glycines Gene Locus: chr2:7449228-7452333 Feature type: polypeptide

Protein Sequence

Length: 637

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.84	1.643	0.514	0.379	1.544	1.65	1.121	1.491	0.802	1.082	0.595	1.57	1.09	1.026	1.121	1.233	1.004	0.5	0.483	0.6	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3401	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.857

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.866	0.087	0.006	0.397	0.041	0.018	0.028	0.007	0.024	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006948	1.000	1.000	Hsc_gene_21538.t2	Hsc_gene_21538.t1;Hsc_gene_21538.t2;Hsc_gene_21538.t3	—	Q19863.1 Transcription factor aptf-4 [Caenorhabditis elegans]	KAI1733049.1 transcription factor AP-2 domain-containing protein [Ditylenchus destructor]	No	0.210

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0005634\|GO:0006355	GO:0008150_0.881\|GO:0009987_0.832\|GO:0065007_0.775\|GO:0050789_0.759\|GO:0005575_0.758\|GO:0110165_0.756\|GO:0050794_0.751\|GO:0005622_0.711\|GO:0003674_0.684\|GO:0048518_0.673\|GO:0005488_0.671\|GO:0008152_0.670\|GO:0019222_0.669\|GO:0031323_0.669\|GO:0044237_0.669\|GO:0043170_0.668\|GO:0043226_0.665\|GO:0048522_0.664\|GO:0044238_0.662\|GO:0080090_0.662\|GO:0060255_0.660\|GO:0009058_0.656\|GO:0009059_0.652\|GO:0044249_0.652\|GO:0010467_0.649\|GO:0006139_0.648\|GO:0009889_0.648\|GO:0031326_0.648\|GO:0043229_0.648\|GO:0010468_0.641\|GO:0010556_0.641\|GO:0016070_0.639\|GO:0090304_0.639\|GO:0034654_0.636\|GO:0141187_0.635\|GO:0032501_0.634\|GO:0009893_0.632\|GO:0031325_0.628\|GO:0032502_0.627\|GO:0032774_0.627\|GO:0010604_0.623\|GO:0019219_0.623\|GO:0051252_0.623\|GO:0006351_0.618\|GO:0006355_0.612\|GO:2001141_0.612\|GO:0009891_0.611\|GO:0031328_0.609\|GO:0010557_0.605\|GO:0016020_0.598\|GO:0006366_0.596\|GO:0045935_0.595\|GO:0006357_0.591\|GO:0051254_0.591\|GO:0048856_0.585\|GO:0045893_0.582\|GO:1902680_0.582\|GO:0045944_0.572\|GO:0097159_0.569\|GO:0003676_0.555\|GO:0007275_0.555\|GO:0048731_0.537\|GO:0043227_0.526\|GO:0003677_0.513\|GO:0043565_0.513\|GO:0003690_0.508\|GO:1990837_0.508\|GO:0043231_0.502	IPR004979+394-620+\|IPR013854+394-604+	—	PF03299+394-604+Transcription_factor_AP-2	—	PTHR10812+394-620+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-362	1.000	363-637	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.788	70052.540	5.820	-7.500	24.490	9.576	52.747	47.253	12.402	12.088	51.020

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	blue	584.040	68.141	81.061	61.259	122.804	56.092	288.320	42.419	46.947	2249.930	1305.795

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	0.972	-1.117	2.374	—	2.909	-5.695	—	—	—	—

No JSON data available for plots.

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