Hg_chrom2_TN10mRNA_3582
Organism: Heterodera glycines Gene Locus: chr2:7461115-7464540 Feature type: polypeptideProtein Sequence
Length: 709
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.82 | 0.615 | 0.146 | 1.316 | 0.832 | 0.772 | 0.635 | 1.348 | 1.506 | 1.111 | 1.991 | 1.41 | 1.193 | 1.526 | 1.028 | 0.74 | 0.833 | 0.217 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3405
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RLKRLAKEMERRKRVPG,KKSTRLLRYMGRKRRPRD,RRSERTNERWPNIYGRLKR
|
5-26
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.130
|
0.089
|
0.069
|
0.039
|
0.241
|
0.121
|
0.221
|
0.026
|
0.235
|
0.936
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006950
|
1.000
|
1.000
|
Hsc_gene_21541.t1
|
Hsc_gene_21541.t1
|
— | — |
KAI1711462.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006954+312-526+
|
— |
PF04870+312-526+Moulting_cycle
|
— |
PTHR21523+112-709+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
191-240
|
2.000
|
1-190;241-709
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
79576.600
|
10.268
|
29.500
|
27.362
|
8.745
|
45.839
|
54.161
|
16.079
|
11.283
|
44.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
208.517
|
23.108
|
13.923
|
16.824
|
552.444
|
668.362
|
76.058
|
16.329
|
18.370
|
385.843
|
228.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.962
|
— | — |
5.008
|
— |
-3.127
|
-5.470
|
2.366
|
— | — | — | — | — |
No JSON data available for plots.